Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MED27-202ENST00000357028 1281 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 SWI5-204ENST00000419867 1048 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 RPL3P9-201ENST00000463217 1183 ntBASIC14.2□□□□□ -0.14
VCANP13611 AC073592.10-201ENST00000624789 597 ntBASIC14.2□□□□□ -0.14
VCANP13611 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
VCANP13611 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 CYP2T1P-202ENST00000641596 2535 ntBASIC14.2□□□□□ -0.14
VCANP13611 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.2□□□□□ -0.14
VCANP13611 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 SPACA5-201ENST00000304355 648 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC14.19□□□□□ -0.14
VCANP13611 RPP30-203ENST00000413330 1004 ntTSL 5 BASIC14.19□□□□□ -0.14
VCANP13611 C3orf18-202ENST00000422619 551 ntTSL 4 BASIC14.19□□□□□ -0.14
VCANP13611 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 PRORSD1P-202ENST00000563365 2154 ntBASIC14.19□□□□□ -0.14
VCANP13611 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.19□□□□□ -0.14
VCANP13611 SMIM17-201ENST00000598409 1076 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 AC147067.2-201ENST00000608161 289 ntBASIC14.19□□□□□ -0.14
VCANP13611 TEAD1-207ENST00000638666 1281 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.19□□□□□ -0.14
VCANP13611 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
VCANP13611 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
VCANP13611 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.19□□□□□ -0.14
VCANP13611 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 RSPH1-202ENST00000398352 937 ntTSL 5 BASIC14.19□□□□□ -0.14
VCANP13611 AC079944.2-201ENST00000478867 734 ntBASIC14.19□□□□□ -0.14
VCANP13611 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 AC064862.6-203ENST00000605139 691 ntTSL 5 BASIC14.19□□□□□ -0.14
VCANP13611 BIN3-212ENST00000640731 450 ntTSL 5 BASIC14.19□□□□□ -0.14
VCANP13611 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
VCANP13611 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
VCANP13611 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.19□□□□□ -0.14
VCANP13611 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 GSTK1-201ENST00000358406 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 PBDC1-202ENST00000373358 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 AKR1C5P-201ENST00000427165 609 ntBASIC14.19□□□□□ -0.14
VCANP13611 ALOX12P1-201ENST00000579299 1229 ntBASIC14.19□□□□□ -0.14
VCANP13611 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
VCANP13611 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
VCANP13611 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 CCT8L1P-201ENST00000465400 1674 ntBASIC14.18□□□□□ -0.14
VCANP13611 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
VCANP13611 NOS2P3-201ENST00000411468 867 ntBASIC14.18□□□□□ -0.14
VCANP13611 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 AC013269.2-201ENST00000422631 727 ntTSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 AL354707.1-204ENST00000451142 846 ntTSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 AC140481.2-201ENST00000457169 695 ntTSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 HDAC2-AS2-216ENST00000522844 808 ntTSL 5 BASIC14.18□□□□□ -0.14
VCANP13611 AC091736.1-201ENST00000609370 305 ntBASIC14.18□□□□□ -0.14
VCANP13611 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
VCANP13611 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 AC138035.3-201ENST00000622706 2791 ntBASIC14.18□□□□□ -0.14
VCANP13611 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
VCANP13611 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 RPSAP61-201ENST00000412542 878 ntBASIC14.18□□□□□ -0.14
VCANP13611 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms