Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
DEPDC4Q8N2C3 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
DEPDC4Q8N2C3 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.43□□□□□ -0.26
DEPDC4Q8N2C3 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
DEPDC4Q8N2C3 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
DEPDC4Q8N2C3 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.43□□□□□ -0.26
DEPDC4Q8N2C3 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
DEPDC4Q8N2C3 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
DEPDC4Q8N2C3 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
DEPDC4Q8N2C3 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 CCDC152-202ENST00000388827 1237 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AL392088.1-201ENST00000428364 670 ntBASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 KRT18P25-201ENST00000508931 1278 ntBASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC087273.1-201ENST00000519368 529 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC006518.1-201ENST00000541449 943 ntBASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 SORD2P-201ENST00000558556 1069 ntBASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC133552.6-201ENST00000613406 534 ntBASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AL031430.1-201ENST00000642067 1039 ntBASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AC106818.1-201ENST00000623223 3242 ntBASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
DEPDC4Q8N2C3 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 OS9-206ENST00000435406 2346 ntTSL 2 BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 KHSRPP1-201ENST00000427983 1768 ntBASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 ACKR1-201ENST00000368121 1240 ntBASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 MIR658-201ENST00000385210 100 ntBASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 BAATP1-201ENST00000412284 1225 ntBASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
DEPDC4Q8N2C3 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms