Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC022384.1-202ENST00000450534 2831 ntAPPRIS ALT2 TSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 PTCHD3P3-201ENST00000403073 906 ntBASIC8.76□□□□□ -1.01
LINC00643Q86TS7 TSPY6P-201ENST00000448518 926 ntBASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 SORD2P-201ENST00000558556 1069 ntBASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 SAMD11P1-201ENST00000571429 661 ntBASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AC061975.2-201ENST00000581722 295 ntBASIC8.76□□□□□ -1.01
LINC00643Q86TS7 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AC025181.2-201ENST00000606994 802 ntBASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AL359075.2-201ENST00000354921 4998 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 ZNF641-203ENST00000544117 7819 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 PDXK-209ENST00000467908 7194 ntTSL 3 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 PKM-222ENST00000568883 1863 ntTSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CCT8-201ENST00000286788 2005 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CEP63-204ENST00000383229 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 GREB1L-209ENST00000580732 8749 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CELF2-AS1-201ENST00000379256 2468 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 MED29-201ENST00000315588 3653 ntAPPRIS P2 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 DEPDC1-201ENST00000370966 4586 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 C2-211ENST00000469372 1906 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 SLC5A11-209ENST00000567758 2246 ntTSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 ABR-201ENST00000291107 2673 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 NFXL1-201ENST00000329043 3723 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 SFI1-203ENST00000400288 4002 ntAPPRIS P4 TSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 ZNF423-204ENST00000562520 4018 ntAPPRIS ALT2 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CAMTA2-208ENST00000572543 4496 ntAPPRIS ALT2 TSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 MSH6-201ENST00000234420 7476 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AC087741.1-201ENST00000570309 4399 ntBASIC8.75□□□□□ -1.01
LINC00643Q86TS7 LILRB2-204ENST00000391749 2286 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 RUNX1T1-227ENST00000520724 2103 ntTSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 TBC1D3I-201ENST00000616671 1982 ntTSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 CHFR-201ENST00000266880 11133 ntTSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ZNF501-201ENST00000396048 3099 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 DFFB-201ENST00000338895 3105 ntTSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ARHGEF10-204ENST00000398564 5480 ntAPPRIS ALT2 TSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 CACNA1C-213ENST00000399629 6562 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 EPB41L4A-201ENST00000261486 4707 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 CYP4F24P-201ENST00000586049 1580 ntBASIC8.75□□□□□ -1.01
LINC00643Q86TS7 CLCN4-202ENST00000380833 6750 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ZNF549-201ENST00000240719 3969 ntAPPRIS P3 TSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 PPP1R12A-203ENST00000450142 5721 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 KRT18P31-201ENST00000506277 1292 ntBASIC8.75□□□□□ -1.01
LINC00643Q86TS7 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 EGLN1P1-201ENST00000531623 762 ntBASIC8.75□□□□□ -1.01
LINC00643Q86TS7 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 AC139530.3-201ENST00000620344 690 ntBASIC8.75□□□□□ -1.01
LINC00643Q86TS7 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 SEMA6D-201ENST00000316364 6099 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 USP20-203ENST00000372429 4315 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 ZNF461-204ENST00000588268 2584 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 FAM234A-201ENST00000301678 2901 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 PHF8-201ENST00000322659 2921 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
LINC00643Q86TS7 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms