RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 DCAF8L2P0C7V8 631 aa18.86■□□□□ 0.61
CLCN4-202ENST00000380833 MYT1Q01538 1121 aa18.39■□□□□ 0.53
CLCN4-202ENST00000380833 PELP1Q8IZL8 1130 aaKnown RBP18.19■□□□□ 0.5
CLCN4-202ENST00000380833 EHMT2Q96KQ7 1210 aa17.78■□□□□ 0.44
CLCN4-202ENST00000380833 SUPT5HO00267 1087 aaKnown RBP17.37■□□□□ 0.37
CLCN4-202ENST00000380833 TTBK1Q5TCY1 1321 aaPredicted RBP17.2■□□□□ 0.34
CLCN4-202ENST00000380833 ERICH6Q7L0X2 663 aa17.16■□□□□ 0.34
CLCN4-202ENST00000380833 SHROOM4Q9ULL8 1493 aa17.03■□□□□ 0.32
CLCN4-202ENST00000380833 CCER1Q8TC90 406 aaPredicted RBP16.92■□□□□ 0.3
CLCN4-202ENST00000380833 RANGAP1P46060 587 aaPredicted RBP16.87■□□□□ 0.29
CLCN4-202ENST00000380833 CENPBP07199 599 aaPredicted RBP16.85■□□□□ 0.29
CLCN4-202ENST00000380833 FAM9AQ8IZU1 332 aaPredicted RBP16.69■□□□□ 0.26
CLCN4-202ENST00000380833 APLP2Q06481 763 aa16.66■□□□□ 0.26
CLCN4-202ENST00000380833 ATP1B4Q9UN42 357 aaPredicted RBP16.64■□□□□ 0.25
CLCN4-202ENST00000380833 YTHDC1Q96MU7 727 aaKnown RBP16.52■□□□□ 0.23
CLCN4-202ENST00000380833 PCGF6Q9BYE7 350 aa16.33■□□□□ 0.2
CLCN4-202ENST00000380833 CHIC1Q5VXU3 224 aa16.3■□□□□ 0.2
CLCN4-202ENST00000380833 NISCHQ9Y2I1 1504 aa16.29■□□□□ 0.2
CLCN4-202ENST00000380833 ZEB1P37275 1124 aaPredicted RBP16.29■□□□□ 0.2
CLCN4-202ENST00000380833 MYT1LQ9UL68 1186 aa16.21■□□□□ 0.18
CLCN4-202ENST00000380833 NEFLP07196 543 aa16.17■□□□□ 0.18
CLCN4-202ENST00000380833 CNGB1Q14028 1251 aaPredicted RBP16.13■□□□□ 0.17
CLCN4-202ENST00000380833 POLR3GLQ9BT43 218 aa16.05■□□□□ 0.16
CLCN4-202ENST00000380833 PPARGC1BQ86YN6 1023 aaKnown RBP16.04■□□□□ 0.16
CLCN4-202ENST00000380833 RTL5Q5HYW3 569 aaPredicted RBP15.97■□□□□ 0.15
CLCN4-202ENST00000380833 GLIPR1L2Q4G1C9 344 aa15.95■□□□□ 0.14
CLCN4-202ENST00000380833 UBTFP17480 764 aaKnown RBP15.92■□□□□ 0.14
CLCN4-202ENST00000380833 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.91■□□□□ 0.14
CLCN4-202ENST00000380833 HNRNPUL2Q1KMD3 747 aaKnown RBP15.91■□□□□ 0.14
CLCN4-202ENST00000380833 SLC4A1APQ9BWU0 796 aaKnown RBP15.89■□□□□ 0.13
CLCN4-202ENST00000380833 DAXXQ9UER7 740 aaPredicted RBP15.85■□□□□ 0.13
CLCN4-202ENST00000380833 ITGAEP38570 1179 aa15.84■□□□□ 0.13
CLCN4-202ENST00000380833 HRCP23327 699 aa15.81■□□□□ 0.12
CLCN4-202ENST00000380833 TRIM41Q8WV44 630 aa15.76■□□□□ 0.11
CLCN4-202ENST00000380833 EIF5BO60841 1220 aaKnown RBP15.72■□□□□ 0.11
CLCN4-202ENST00000380833 BCL11AQ9H165 835 aa15.62■□□□□ 0.09
CLCN4-202ENST00000380833 SLC24A1O60721 1099 aa15.52■□□□□ 0.07
CLCN4-202ENST00000380833 GTF3C3Q9Y5Q9 886 aa15.5■□□□□ 0.07
CLCN4-202ENST00000380833 ZNF316A6NFI3 1004 aaPredicted RBP15.49■□□□□ 0.07
CLCN4-202ENST00000380833 PLPPR3Q6T4P5 718 aa15.44■□□□□ 0.06
CLCN4-202ENST00000380833 CLSPNQ9HAW4 1339 aa15.39■□□□□ 0.05
CLCN4-202ENST00000380833 BCANQ96GW7 911 aa15.31■□□□□ 0.04
CLCN4-202ENST00000380833 ACIN1Q9UKV3 1341 aaKnown RBP15.23■□□□□ 0.03
CLCN4-202ENST00000380833 CDK11AQ9UQ88 783 aaPredicted RBP15.23■□□□□ 0.03
CLCN4-202ENST00000380833 ZNF326Q5BKZ1 582 aaKnown RBP15.22■□□□□ 0.03
CLCN4-202ENST00000380833 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.03
CLCN4-202ENST00000380833 FBLN2P98095 1184 aa15.2■□□□□ 0.02
CLCN4-202ENST00000380833 DIEXFQ68CQ4 756 aaKnown RBP15.17■□□□□ 0.02
CLCN4-202ENST00000380833 ARID3CA6NKF2 412 aa15.15■□□□□ 0.02
CLCN4-202ENST00000380833 TRIM52Q96A61 297 aa15.15■□□□□ 0.02
CLCN4-202ENST00000380833 FAM50AQ14320 339 aaKnown RBP15.14■□□□□ 0.01
CLCN4-202ENST00000380833 NEUROD1Q13562 356 aa15.1■□□□□ 0.01
CLCN4-202ENST00000380833 ANP32EQ9BTT0 268 aa15.08■□□□□ 0
CLCN4-202ENST00000380833 LOC105371045A0A1W2PR82 267 aa15.06■□□□□ 0
CLCN4-202ENST00000380833 ANP32AP39687 249 aaKnown RBP15.05■□□□□ -0
CLCN4-202ENST00000380833 TNNT2P45379 298 aaPredicted RBP15.04■□□□□ -0
CLCN4-202ENST00000380833 PLEKHG5O94827 1062 aa15.03■□□□□ -0
CLCN4-202ENST00000380833 ZBTB47Q9UFB7 747 aaPredicted RBP15□□□□□ -0.01
CLCN4-202ENST00000380833 A0A0G2JS52 829 aa14.99□□□□□ -0.01
CLCN4-202ENST00000380833 SENP3Q9H4L4 574 aaPredicted RBP14.98□□□□□ -0.01
CLCN4-202ENST00000380833 PABPN1Q86U42 306 aaKnown RBP eCLIP14.93□□□□□ -0.02
CLCN4-202ENST00000380833 ANP32BQ92688 251 aaKnown RBP14.93□□□□□ -0.02
CLCN4-202ENST00000380833 CDK11BP21127 795 aaKnown RBP14.93□□□□□ -0.02
CLCN4-202ENST00000380833 CANXP27824 592 aaKnown RBP14.93□□□□□ -0.02
CLCN4-202ENST00000380833 SCAF1Q9H7N4 1312 aaKnown RBP14.93□□□□□ -0.02
CLCN4-202ENST00000380833 ABCC9O60706 1549 aa14.88□□□□□ -0.03
CLCN4-202ENST00000380833 NBR1Q14596 966 aa14.86□□□□□ -0.03
CLCN4-202ENST00000380833 NCLP19338 710 aaKnown RBP14.83□□□□□ -0.03
CLCN4-202ENST00000380833 P3H3Q8IVL6 736 aa14.83□□□□□ -0.04
CLCN4-202ENST00000380833 CHGAP10645 457 aaKnown RBP14.81□□□□□ -0.04
CLCN4-202ENST00000380833 ZNF777Q9ULD5 760 aaPredicted RBP14.81□□□□□ -0.04
CLCN4-202ENST00000380833 TRIM44Q96DX7 344 aaPredicted RBP14.77□□□□□ -0.04
CLCN4-202ENST00000380833 ESF1Q9H501 851 aaKnown RBP14.77□□□□□ -0.05
CLCN4-202ENST00000380833 ZBTB7CA1YPR0 619 aa14.77□□□□□ -0.05
CLCN4-202ENST00000380833 PRKCSHP14314 528 aaPredicted RBP14.75□□□□□ -0.05
CLCN4-202ENST00000380833 STAG3Q9UJ98 1225 aa14.75□□□□□ -0.05
CLCN4-202ENST00000380833 NPM2Q86SE8 214 aaKnown RBP14.74□□□□□ -0.05
CLCN4-202ENST00000380833 NEFMP07197 916 aa14.73□□□□□ -0.05
CLCN4-202ENST00000380833 ERICH6BQ5W0A0 696 aa14.71□□□□□ -0.06
CLCN4-202ENST00000380833 RTN4Q9NQC3 1192 aaKnown RBP14.68□□□□□ -0.06
CLCN4-202ENST00000380833 TULP1O00294 542 aaPredicted RBP14.67□□□□□ -0.06
CLCN4-202ENST00000380833 SALL2Q9Y467 1007 aaPredicted RBP14.67□□□□□ -0.06
CLCN4-202ENST00000380833 NAP1L5Q96NT1 182 aaPredicted RBP14.66□□□□□ -0.06
CLCN4-202ENST00000380833 PODXL2Q9NZ53 605 aa14.64□□□□□ -0.07
CLCN4-202ENST00000380833 ARXQ96QS3 562 aa14.63□□□□□ -0.07
CLCN4-202ENST00000380833 ANP32CO43423 234 aa14.59□□□□□ -0.07
CLCN4-202ENST00000380833 FKBP8Q14318 412 aa14.59□□□□□ -0.07
CLCN4-202ENST00000380833 AMER1Q5JTC6 1135 aaPredicted RBP14.58□□□□□ -0.07
CLCN4-202ENST00000380833 C14orf37Q86TY3 774 aa14.56□□□□□ -0.08
CLCN4-202ENST00000380833 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.52□□□□□ -0.08
CLCN4-202ENST00000380833 HSP90AA1P07900 732 aaKnown RBP14.52□□□□□ -0.08
CLCN4-202ENST00000380833 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.52□□□□□ -0.08
CLCN4-202ENST00000380833 DEKP35659 375 aaKnown RBP14.51□□□□□ -0.09
CLCN4-202ENST00000380833 NCBP3Q53F19 620 aaKnown RBP14.5□□□□□ -0.09
CLCN4-202ENST00000380833 TAOK2Q9UL54 1235 aa14.48□□□□□ -0.09
CLCN4-202ENST00000380833 PKNOX2Q96KN3 472 aa14.46□□□□□ -0.09
CLCN4-202ENST00000380833 TPRNQ4KMQ1 711 aa14.45□□□□□ -0.1
CLCN4-202ENST00000380833 SENP3-EIF4A1A0A087X0R7 540 aa14.43□□□□□ -0.1
CLCN4-202ENST00000380833 HAP1P54257 671 aaPredicted RBP14.4□□□□□ -0.1
CLCN4-202ENST00000380833 VSIG10Q8N0Z9 540 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms