Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC11.98□□□□□ -0.49
PDLIM3Q53GG5 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 RN7SL832P-201ENST00000607781 1756 ntBASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 ABCA2-202ENST00000341511 8063 ntAPPRIS P2 TSL 5 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 AC090114.2-201ENST00000608477 7054 ntBASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 TEX30-203ENST00000376022 828 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 TSACC-208ENST00000481479 741 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 IQSEC3P1-201ENST00000538799 536 ntBASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 KLK3-207ENST00000595952 969 ntTSL 3 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 NDUFV2P1-201ENST00000596415 907 ntBASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 AL049840.4-201ENST00000602422 811 ntBASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 AC097724.1-201ENST00000609581 426 ntBASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 BX539320.1-201ENST00000623759 877 ntBASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PDLIM3Q53GG5 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 AC215219.1-201ENST00000400706 1817 ntBASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 AC022616.1-201ENST00000518688 554 ntBASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 ENPP7P5-201ENST00000541031 1031 ntBASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC11.96□□□□□ -0.49
PDLIM3Q53GG5 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 412 ms