Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL28A1Q2UY09 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 LINC01165-201ENST00000445190 1623 ntBASIC13.75□□□□□ -0.21
COL28A1Q2UY09 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 MIR566-201ENST00000385187 94 ntBASIC13.75□□□□□ -0.21
COL28A1Q2UY09 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 HNRNPA1P42-201ENST00000458678 957 ntBASIC13.75□□□□□ -0.21
COL28A1Q2UY09 CISD2-202ENST00000503643 808 ntTSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 AP005264.6-204ENST00000588436 719 ntBASIC13.75□□□□□ -0.21
COL28A1Q2UY09 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 MIR6720-201ENST00000611664 98 ntBASIC13.75□□□□□ -0.21
COL28A1Q2UY09 TP53-221ENST00000615910 1149 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL28A1Q2UY09 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 LINC01815-202ENST00000641468 1409 ntBASIC13.74□□□□□ -0.21
COL28A1Q2UY09 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms