Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
H3F3AP84243 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
H3F3AP84243 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
H3F3AP84243 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
H3F3AP84243 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
H3F3AP84243 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC12.75□□□□□ -0.37
H3F3AP84243 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
H3F3AP84243 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
H3F3AP84243 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
H3F3AP84243 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
H3F3AP84243 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
H3F3AP84243 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
H3F3AP84243 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
H3F3AP84243 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
H3F3AP84243 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
H3F3AP84243 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
H3F3AP84243 AL590824.1-201ENST00000403828 1349 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
H3F3AP84243 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 CYP46A4P-201ENST00000414953 267 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC12.74□□□□□ -0.37
H3F3AP84243 RPS9P1-201ENST00000419943 583 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 KRTAP19-9P-201ENST00000421795 191 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 ISCA2P1-201ENST00000425548 448 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC12.74□□□□□ -0.37
H3F3AP84243 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC12.74□□□□□ -0.37
H3F3AP84243 RN7SL277P-201ENST00000481521 288 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 AL161670.2-201ENST00000557650 1227 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC12.74□□□□□ -0.37
H3F3AP84243 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC12.74□□□□□ -0.37
H3F3AP84243 MEG3_2.1-201ENST00000611456 105 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 AC091544.8-201ENST00000619490 361 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
H3F3AP84243 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.74□□□□□ -0.37
H3F3AP84243 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 AC010327.5-201ENST00000586923 3061 ntBASIC12.74□□□□□ -0.37
H3F3AP84243 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12.74□□□□□ -0.37
H3F3AP84243 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
H3F3AP84243 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC12.74□□□□□ -0.37
H3F3AP84243 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
H3F3AP84243 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC12.73□□□□□ -0.37
H3F3AP84243 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC12.73□□□□□ -0.37
H3F3AP84243 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC12.73□□□□□ -0.37
H3F3AP84243 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
H3F3AP84243 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
H3F3AP84243 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC12.73□□□□□ -0.37
H3F3AP84243 FRMPD2B-201ENST00000431305 1347 ntBASIC12.73□□□□□ -0.37
H3F3AP84243 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms