Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.76□□□□□ -0.05
PTPN9P43378 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.76□□□□□ -0.05
PTPN9P43378 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PTPN9P43378 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PTPN9P43378 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PTPN9P43378 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
PTPN9P43378 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 AC067931.2-201ENST00000623655 2003 ntBASIC14.76□□□□□ -0.05
PTPN9P43378 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
PTPN9P43378 NCLP1-201ENST00000445357 1963 ntBASIC14.76□□□□□ -0.05
PTPN9P43378 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN9P43378 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
PTPN9P43378 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
PTPN9P43378 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 FAM90A12P-201ENST00000519497 2375 ntBASIC14.75□□□□□ -0.05
PTPN9P43378 FAM90A24P-201ENST00000520792 2369 ntBASIC14.75□□□□□ -0.05
PTPN9P43378 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.75□□□□□ -0.05
PTPN9P43378 KRT17P5-201ENST00000332088 839 ntBASIC14.75□□□□□ -0.05
PTPN9P43378 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.75□□□□□ -0.05
PTPN9P43378 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.75□□□□□ -0.05
PTPN9P43378 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
PTPN9P43378 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC14.75□□□□□ -0.05
PTPN9P43378 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.75□□□□□ -0.05
PTPN9P43378 POU5F1P2-201ENST00000521750 823 ntBASIC14.75□□□□□ -0.05
PTPN9P43378 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
PTPN9P43378 AL161670.2-201ENST00000557650 1227 ntBASIC14.75□□□□□ -0.05
PTPN9P43378 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC14.75□□□□□ -0.05
PTPN9P43378 AC244093.1-201ENST00000610837 814 ntBASIC14.75□□□□□ -0.05
PTPN9P43378 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN9P43378 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.75□□□□□ -0.05
PTPN9P43378 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN9P43378 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
PTPN9P43378 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.74□□□□□ -0.05
PTPN9P43378 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 ELK2AP-201ENST00000392510 1007 ntBASIC14.74□□□□□ -0.05
PTPN9P43378 BANF1P3-201ENST00000412556 261 ntBASIC14.74□□□□□ -0.05
PTPN9P43378 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.74□□□□□ -0.05
PTPN9P43378 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 CALR4P-201ENST00000431943 946 ntBASIC14.74□□□□□ -0.05
PTPN9P43378 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.74□□□□□ -0.05
PTPN9P43378 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC14.74□□□□□ -0.05
PTPN9P43378 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.74□□□□□ -0.05
PTPN9P43378 PHBP15-201ENST00000574228 665 ntBASIC14.74□□□□□ -0.05
PTPN9P43378 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.74□□□□□ -0.05
PTPN9P43378 MIR6769A-201ENST00000617340 73 ntBASIC14.74□□□□□ -0.05
PTPN9P43378 AC079336.7-201ENST00000623428 1078 ntBASIC14.74□□□□□ -0.05
PTPN9P43378 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms