Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.57□□□□□ -0.08
HMGA1P17096 AC103702.1-201ENST00000548801 2630 ntBASIC14.57□□□□□ -0.08
HMGA1P17096 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
HMGA1P17096 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
HMGA1P17096 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
HMGA1P17096 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
HMGA1P17096 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
HMGA1P17096 BCAS2P2-201ENST00000425064 674 ntBASIC14.57□□□□□ -0.08
HMGA1P17096 AQP7P5-201ENST00000428759 1049 ntBASIC14.57□□□□□ -0.08
HMGA1P17096 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC14.57□□□□□ -0.08
HMGA1P17096 AQP7P4-201ENST00000447083 1042 ntBASIC14.57□□□□□ -0.08
HMGA1P17096 AQP7P2-201ENST00000453967 1041 ntBASIC14.57□□□□□ -0.08
HMGA1P17096 AREG-202ENST00000502307 956 ntTSL 5 BASIC14.57□□□□□ -0.08
HMGA1P17096 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC14.57□□□□□ -0.08
HMGA1P17096 AC013553.1-201ENST00000560906 267 ntBASIC14.57□□□□□ -0.08
HMGA1P17096 COQ4-204ENST00000608951 781 ntTSL 2 BASIC14.57□□□□□ -0.08
HMGA1P17096 AQP7P3-201ENST00000624547 1041 ntBASIC14.57□□□□□ -0.08
HMGA1P17096 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
HMGA1P17096 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
HMGA1P17096 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.57□□□□□ -0.08
HMGA1P17096 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HMGA1P17096 AC061965.1-201ENST00000560524 1465 ntBASIC14.57□□□□□ -0.08
HMGA1P17096 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 MIR1307-201ENST00000408840 149 ntBASIC14.56□□□□□ -0.08
HMGA1P17096 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGA1P17096 AC005722.1-201ENST00000431878 964 ntBASIC14.56□□□□□ -0.08
HMGA1P17096 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGA1P17096 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC14.56□□□□□ -0.08
HMGA1P17096 KRT18P66-201ENST00000452970 1269 ntBASIC14.56□□□□□ -0.08
HMGA1P17096 AL157792.1-201ENST00000488281 530 ntBASIC14.56□□□□□ -0.08
HMGA1P17096 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC14.56□□□□□ -0.08
HMGA1P17096 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGA1P17096 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HMGA1P17096 FOXN3-AS2-201ENST00000554071 1262 ntBASIC14.56□□□□□ -0.08
HMGA1P17096 C2orf69P1-201ENST00000563532 1093 ntBASIC14.56□□□□□ -0.08
HMGA1P17096 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGA1P17096 TRMT112P3-201ENST00000580149 358 ntBASIC14.56□□□□□ -0.08
HMGA1P17096 MIR4326-201ENST00000582203 59 ntBASIC14.56□□□□□ -0.08
HMGA1P17096 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HMGA1P17096 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGA1P17096 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.56□□□□□ -0.08
HMGA1P17096 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.56□□□□□ -0.08
HMGA1P17096 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGA1P17096 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.56□□□□□ -0.08
HMGA1P17096 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
HMGA1P17096 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HMGA1P17096 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 AC093462.1-201ENST00000621167 1683 ntBASIC14.55□□□□□ -0.08
HMGA1P17096 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
HMGA1P17096 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGA1P17096 AL365181.1-201ENST00000564032 1828 ntBASIC14.55□□□□□ -0.08
HMGA1P17096 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGA1P17096 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGA1P17096 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGA1P17096 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGA1P17096 PGAM1P12-201ENST00000505622 748 ntBASIC14.55□□□□□ -0.08
HMGA1P17096 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGA1P17096 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGA1P17096 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGA1P17096 MT2A-202ENST00000561491 581 ntTSL 2 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms