Protein–RNA interactions for Protein: Q7Z3D4

LYSMD3, LysM and putative peptidoglycan-binding domain-containing protein 3, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3Q7Z3D4 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 AC011474.4-201ENST00000623523 2076 ntBASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 AC105206.1-202ENST00000314927 2368 ntBASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
LYSMD3Q7Z3D4 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 AC090643.2-201ENST00000623442 2029 ntBASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 LINC01165-201ENST00000445190 1623 ntBASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 AL157791.1-201ENST00000553667 1699 ntBASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 ACTG1P2-201ENST00000415776 1125 ntBASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 ACTG1P11-201ENST00000425411 1125 ntBASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 AC005077.2-201ENST00000449786 690 ntBASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 SPTLC1P5-201ENST00000450718 252 ntBASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 ACTG1P17-201ENST00000558391 1119 ntBASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 AC100757.4-201ENST00000626934 759 ntBASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LYSMD3Q7Z3D4 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 ST20-AS1-201ENST00000560255 4223 ntBASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 NCR3-202ENST00000376071 541 ntTSL 5 BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 HCG24-202ENST00000414398 717 ntTSL 3 BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LYSMD3Q7Z3D4 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms