Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
GFRA1P56159 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 AC006372.4-201ENST00000624122 1543 ntBASIC12.72□□□□□ -0.37
GFRA1P56159 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC12.72□□□□□ -0.37
GFRA1P56159 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 SAT1-201ENST00000379251 801 ntTSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 SAT1-202ENST00000379253 909 ntTSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 SAT1-203ENST00000379254 868 ntTSL 3 BASIC12.72□□□□□ -0.37
GFRA1P56159 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC12.72□□□□□ -0.37
GFRA1P56159 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 AC138701.2-201ENST00000553634 226 ntBASIC12.72□□□□□ -0.37
GFRA1P56159 LINC01922-201ENST00000562582 719 ntBASIC12.72□□□□□ -0.37
GFRA1P56159 AL031713.1-201ENST00000564813 661 ntBASIC12.72□□□□□ -0.37
GFRA1P56159 RN7SL190P-201ENST00000582519 257 ntBASIC12.72□□□□□ -0.37
GFRA1P56159 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 YRDCP1-201ENST00000621419 643 ntBASIC12.72□□□□□ -0.37
GFRA1P56159 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 AL139158.3-201ENST00000641212 1562 ntBASIC12.72□□□□□ -0.37
GFRA1P56159 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
GFRA1P56159 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.72□□□□□ -0.37
GFRA1P56159 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC12.72□□□□□ -0.37
GFRA1P56159 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
GFRA1P56159 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
GFRA1P56159 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC12.71□□□□□ -0.37
GFRA1P56159 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 HLA-DMA-203ENST00000395305 777 ntBASIC12.71□□□□□ -0.37
GFRA1P56159 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC12.71□□□□□ -0.37
GFRA1P56159 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 AC069218.1-201ENST00000435269 762 ntBASIC12.71□□□□□ -0.37
GFRA1P56159 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 AC078991.1-201ENST00000437297 610 ntBASIC12.71□□□□□ -0.37
GFRA1P56159 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.71□□□□□ -0.37
GFRA1P56159 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 AC018638.5-201ENST00000450885 754 ntBASIC12.71□□□□□ -0.37
GFRA1P56159 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC12.71□□□□□ -0.37
GFRA1P56159 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC12.71□□□□□ -0.37
GFRA1P56159 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
GFRA1P56159 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC12.71□□□□□ -0.37
GFRA1P56159 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC12.71□□□□□ -0.37
GFRA1P56159 KLF17P1-201ENST00000547105 1126 ntBASIC12.71□□□□□ -0.37
GFRA1P56159 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC12.71□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms