Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC18.86■□□□□ 0.617e-12■□□□□ 8.3
YBX3P16989 POLR2H-207ENST00000455712 823 ntTSL 317.17■□□□□ 0.347e-12■□□□□ 8.3
YBX3P16989 POLR2H-205ENST00000443489 807 ntTSL 2 BASIC15.72■□□□□ 0.117e-12■□□□□ 8.3
YBX3P16989 POLR2H-210ENST00000476003 648 ntTSL 215.72■□□□□ 0.117e-12■□□□□ 8.3
YBX3P16989 POLR2H-211ENST00000488213 1035 ntTSL 214.58□□□□□ -0.087e-12■□□□□ 8.3
YBX3P16989 POLR2H-202ENST00000429568 878 ntTSL 2 BASIC14.15□□□□□ -0.147e-12■□□□□ 8.3
YBX3P16989 POLR2H-212ENST00000489043 433 ntTSL 214.15□□□□□ -0.147e-12■□□□□ 8.3
YBX3P16989 POLR2H-206ENST00000452961 791 ntTSL 2 BASIC12.65□□□□□ -0.387e-12■□□□□ 8.3
YBX3P16989 UBE2J2-213ENST00000471154 336 ntTSL 54.64□□□□□ -1.672e-22■□□□□ 8.3
YBX3P16989 ASAH1-237ENST00000636823 571 ntTSL 48.68□□□□□ -1.027e-8■□□□□ 8.3
YBX3P16989 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC8.37□□□□□ -1.077e-8■□□□□ 8.3
YBX3P16989 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC8.37□□□□□ -1.077e-8■□□□□ 8.3
YBX3P16989 ASAH1-256ENST00000637718 662 ntTSL 58.25□□□□□ -1.097e-8■□□□□ 8.3
YBX3P16989 ASAH1-208ENST00000519545 771 ntTSL 36.63□□□□□ -1.357e-8■□□□□ 8.3
YBX3P16989 ARL2-203ENST00000529254 601 nt18.81■□□□□ 0.63e-8■□□□□ 8.3
YBX3P16989 DNM2-219ENST00000591818 538 ntTSL 417.21■□□□□ 0.355e-21■□□□□ 8.3
YBX3P16989 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.061e-17■□□□□ 8.3
YBX3P16989 FUNDC2-202ENST00000456179 871 ntTSL 312.15□□□□□ -0.461e-17■□□□□ 8.3
YBX3P16989 FUNDC2-207ENST00000492303 3685 ntTSL 28.56□□□□□ -1.041e-17■□□□□ 8.3
YBX3P16989 FUNDC2-203ENST00000471528 765 ntTSL 37.82□□□□□ -1.161e-17■□□□□ 8.3
YBX3P16989 KDM5C-212ENST00000481369 1361 ntTSL 215.72■□□□□ 0.118e-8■□□□□ 8.3
YBX3P16989 KDM5C-209ENST00000465402 720 ntTSL 311.46□□□□□ -0.578e-8■□□□□ 8.3
YBX3P16989 MCM4-213ENST00000521261 1342 ntTSL 26.12□□□□□ -1.438e-8■□□□□ 8.3
YBX3P16989 MPG-202ENST00000356432 1205 ntAPPRIS ALT2 TSL 1 (best)25.73■■□□□ 1.718e-7■□□□□ 8.3
YBX3P16989 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC24.97■■□□□ 1.598e-7■□□□□ 8.3
YBX3P16989 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.91■■□□□ 1.588e-7■□□□□ 8.3
YBX3P16989 MPG-204ENST00000436333 884 ntTSL 222.08■■□□□ 1.138e-7■□□□□ 8.3
YBX3P16989 HBG2-204ENST00000444587 307 ntTSL 2 BASIC8.26□□□□□ -1.091e-323■□□□□ 8.3
YBX3P16989 RPS23-207ENST00000511844 530 ntTSL 2 BASIC17.91■□□□□ 0.461e-323■□□□□ 8.3
YBX3P16989 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.448e-8■□□□□ 8.3
YBX3P16989 MCM8-203ENST00000378886 3835 ntTSL 1 (best) BASIC9.68□□□□□ -0.868e-8■□□□□ 8.3
YBX3P16989 MCM8-204ENST00000378896 3769 ntAPPRIS P4 TSL 1 (best) BASIC9.16□□□□□ -0.948e-8■□□□□ 8.3
YBX3P16989 MCM8-202ENST00000378883 3574 ntTSL 1 (best) BASIC8.98□□□□□ -0.978e-8■□□□□ 8.3
YBX3P16989 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC8.47□□□□□ -1.058e-8■□□□□ 8.3
YBX3P16989 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC8.46□□□□□ -1.068e-8■□□□□ 8.3
YBX3P16989 NMT1-202ENST00000543908 1066 ntTSL 216.28■□□□□ 0.22e-8■□□□□ 8.3
YBX3P16989 TLN1-206ENST00000486788 551 ntTSL 519.33■□□□□ 0.682e-10■□□□□ 8.3
YBX3P16989 RPL36A-205ENST00000465744 710 ntTSL 1 (best)16.27■□□□□ 0.28e-20■□□□□ 8.3
YBX3P16989 RPL36A-203ENST00000427805 910 ntTSL 1 (best) BASIC14.17□□□□□ -0.148e-20■□□□□ 8.3
YBX3P16989 RPL36A-204ENST00000465340 2240 ntTSL 213.93□□□□□ -0.188e-20■□□□□ 8.3
YBX3P16989 RHOXF2-201ENST00000371388 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.412e-10■□□□□ 8.3
YBX3P16989 RPL36A-HNRNPH2-202ENST00000409338 572 ntTSL 4 BASIC11.68□□□□□ -0.548e-20■□□□□ 8.3
YBX3P16989 RPL36A-202ENST00000392994 691 ntTSL 2 BASIC10.47□□□□□ -0.738e-20■□□□□ 8.3
YBX3P16989 RPL36A-201ENST00000372849 433 ntTSL 59.9□□□□□ -0.828e-20■□□□□ 8.3
YBX3P16989 RPL36A-HNRNPH2-201ENST00000409170 562 ntAPPRIS P1 TSL 4 BASIC9.59□□□□□ -0.878e-20■□□□□ 8.3
YBX3P16989 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC8.41□□□□□ -1.068e-20■□□□□ 8.3
YBX3P16989 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.068e-20■□□□□ 8.3
YBX3P16989 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC5.73□□□□□ -1.498e-20■□□□□ 8.3
YBX3P16989 RPL36A-208ENST00000491851 547 ntTSL 25.57□□□□□ -1.528e-20■□□□□ 8.3
YBX3P16989 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.896e-8■□□□□ 8.3
YBX3P16989 PAGE5-202ENST00000374952 428 ntTSL 5 BASIC12.05□□□□□ -0.486e-8■□□□□ 8.3
YBX3P16989 PAGE5-203ENST00000374955 540 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.686e-8■□□□□ 8.3
YBX3P16989 ARF4-202ENST00000463880 641 ntTSL 326.53■■□□□ 1.844e-13■□□□□ 8.3
YBX3P16989 ARF4-208ENST00000495354 495 ntTSL 316.82■□□□□ 0.284e-13■□□□□ 8.3
YBX3P16989 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.214e-13■□□□□ 8.3
YBX3P16989 ARF4-207ENST00000493378 548 ntTSL 313.61□□□□□ -0.234e-13■□□□□ 8.3
YBX3P16989 BCR-215ENST00000487968 2870 ntTSL 212.76□□□□□ -0.374e-13■□□□□ 8.3
YBX3P16989 ARF4-205ENST00000488156 732 ntTSL 39.43□□□□□ -0.94e-13■□□□□ 8.3
YBX3P16989 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC8.45□□□□□ -1.064e-13■□□□□ 8.3
YBX3P16989 ARF4-204ENST00000486310 1601 ntTSL 38.33□□□□□ -1.084e-13■□□□□ 8.3
YBX3P16989 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.68□□□□□ -1.54e-13■□□□□ 8.3
YBX3P16989 ARF4-203ENST00000483848 404 ntTSL 53.48□□□□□ -1.854e-13■□□□□ 8.3
YBX3P16989 STXBP1-210ENST00000627871 538 ntTSL 327.65■■■□□ 2.027e-8■□□□□ 8.3
YBX3P16989 STXBP1-213ENST00000630492 572 ntTSL 526.38■■□□□ 1.817e-8■□□□□ 8.3
YBX3P16989 HNRNPA1-205ENST00000547566 1234 ntTSL 1 (best)22.14■■□□□ 1.131e-27■□□□□ 8.3
YBX3P16989 HNRNPA1-209ENST00000550482 832 ntTSL 219.84■□□□□ 0.771e-27■□□□□ 8.3
YBX3P16989 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC17.42■□□□□ 0.381e-27■□□□□ 8.3
YBX3P16989 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.82■□□□□ 0.121e-27■□□□□ 8.3
YBX3P16989 HNRNPA1-206ENST00000547708 530 ntTSL 414.15□□□□□ -0.141e-27■□□□□ 8.3
YBX3P16989 HNRNPA1-203ENST00000546500 4121 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.61e-27■□□□□ 8.3
YBX3P16989 HNRNPA1-204ENST00000547276 1539 ntTSL 1 (best) BASIC10.08□□□□□ -0.81e-27■□□□□ 8.3
YBX3P16989 HNRNPA1-208ENST00000548688 711 ntTSL 39.48□□□□□ -0.891e-27■□□□□ 8.3
YBX3P16989 HNRNPA1-207ENST00000547870 920 ntTSL 37.58□□□□□ -1.21e-27■□□□□ 8.3
YBX3P16989 HNRNPA1-213ENST00000551702 481 ntTSL 35.44□□□□□ -1.541e-27■□□□□ 8.3
YBX3P16989 SERPIND1-202ENST00000406799 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.211e-11■□□□□ 8.3
YBX3P16989 PTOV1-207ENST00000596424 625 ntTSL 224.37■■□□□ 1.492e-9■□□□□ 8.3
YBX3P16989 PTOV1-209ENST00000597793 1716 ntTSL 1 (best)23.69■■□□□ 1.382e-9■□□□□ 8.3
YBX3P16989 PTOV1-216ENST00000601093 522 ntTSL 215.57■□□□□ 0.082e-9■□□□□ 8.3
YBX3P16989 CNOT1-203ENST00000562046 578 ntTSL 56.35□□□□□ -1.397e-11■□□□□ 8.3
YBX3P16989 C3-210ENST00000598805 873 ntTSL 219.79■□□□□ 0.761e-36■□□□□ 8.3
YBX3P16989 RPL37-202ENST00000504562 505 ntTSL 214.64□□□□□ -0.071e-17■□□□□ 8.3
YBX3P16989 H3F3B-203ENST00000586518 1701 nt33.13■■■□□ 2.895e-17■□□□□ 8.2
YBX3P16989 PPP4C-212ENST00000567828 742 ntTSL 330.59■■■□□ 2.494e-9■□□□□ 8.2
YBX3P16989 PLCXD1-208ENST00000445062 555 ntTSL 429.86■■■□□ 2.377e-8■□□□□ 8.2
YBX3P16989 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC26.56■■□□□ 1.847e-8■□□□□ 8.2
YBX3P16989 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC23.61■■□□□ 1.377e-8■□□□□ 8.2
YBX3P16989 RPL28-205ENST00000558131 444 ntTSL 5 BASIC22.47■■□□□ 1.197e-8■□□□□ 8.2
YBX3P16989 TIMM17B-207ENST00000490755 666 ntTSL 522■■□□□ 1.114e-9■□□□□ 8.2
YBX3P16989 SYS1-DBNDD2-203ENST00000458187 673 ntAPPRIS P5 TSL 521.66■■□□□ 1.067e-8■□□□□ 8.2
YBX3P16989 RPL28-211ENST00000560881 1692 ntTSL 521.23■□□□□ 0.997e-8■□□□□ 8.2
YBX3P16989 ERCC2-202ENST00000391942 1488 ntTSL 220.85■□□□□ 0.937e-8■□□□□ 8.2
YBX3P16989 PLCXD1-206ENST00000430923 587 ntAPPRIS ALT2 TSL 220.77■□□□□ 0.927e-8■□□□□ 8.2
YBX3P16989 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.71■□□□□ 0.917e-8■□□□□ 8.2
YBX3P16989 ERCC2-210ENST00000587376 817 ntTSL 520.54■□□□□ 0.887e-8■□□□□ 8.2
YBX3P16989 SYS1-DBNDD2-204ENST00000475242 529 ntTSL 320.1■□□□□ 0.817e-8■□□□□ 8.2
YBX3P16989 PLCXD1-209ENST00000447472 587 ntAPPRIS ALT2 TSL 420.02■□□□□ 0.87e-8■□□□□ 8.2
YBX3P16989 SEC23A-214ENST00000557437 575 ntTSL 419.99■□□□□ 0.797e-8■□□□□ 8.2
YBX3P16989 PLCXD1-204ENST00000415337 579 ntAPPRIS ALT2 TSL 519.74■□□□□ 0.757e-8■□□□□ 8.2
YBX3P16989 PLCXD1-211ENST00000484611 540 ntTSL 419.74■□□□□ 0.757e-8■□□□□ 8.2
YBX3P16989 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.757e-8■□□□□ 8.2
Retrieved 100 of 29,075 protein–RNA pairs in 475.4 ms