RNA–Protein interactions for RNA: ENST00000521261.1

MCM4-213, Transcript of minichromosome maintenance complex component 4, humanhuman

TSL 2

Gene MCM4, Length 1,342 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCM4-213ENST00000521261 AEBP2Q6ZN18 517 aaPredicted RBP22.44■■□□□ 1.18
MCM4-213ENST00000521261 CHIC1Q5VXU3 224 aa21.58■■□□□ 1.05
MCM4-213ENST00000521261 SENP3Q9H4L4 574 aaPredicted RBP19.04■□□□□ 0.64
MCM4-213ENST00000521261 PHF23Q9BUL5 403 aaPredicted RBP18.96■□□□□ 0.63
MCM4-213ENST00000521261 FOXD1Q16676 465 aa17.73■□□□□ 0.43
MCM4-213ENST00000521261 PLPPR3Q6T4P5 718 aa17.33■□□□□ 0.36
MCM4-213ENST00000521261 PPP6R1Q9UPN7 881 aa16.82■□□□□ 0.28
MCM4-213ENST00000521261 ADRA2BP18089 450 aa16.75■□□□□ 0.27
MCM4-213ENST00000521261 PIAS4Q8N2W9 510 aaPredicted RBP16.59■□□□□ 0.25
MCM4-213ENST00000521261 MSH5O43196 834 aa16.45■□□□□ 0.22
MCM4-213ENST00000521261 POTEDQ86YR6 584 aa15.57■□□□□ 0.08
MCM4-213ENST00000521261 MAPK8IP2Q13387 824 aaPredicted RBP15.29■□□□□ 0.04
MCM4-213ENST00000521261 SCAF1Q9H7N4 1312 aaKnown RBP15.28■□□□□ 0.04
MCM4-213ENST00000521261 PPP4R3CPQ6ZMV5 832 aa15.23■□□□□ 0.03
MCM4-213ENST00000521261 DMRT2Q9Y5R5 561 aa15.17■□□□□ 0.02
MCM4-213ENST00000521261 CNKSR2Q8WXI2 1034 aa14.89□□□□□ -0.03
MCM4-213ENST00000521261 HOXD11P31277 338 aaPredicted RBP14.76□□□□□ -0.05
MCM4-213ENST00000521261 KCNA4P22459 653 aa14.75□□□□□ -0.05
MCM4-213ENST00000521261 NCBP3Q53F19 620 aaKnown RBP14.7□□□□□ -0.06
MCM4-213ENST00000521261 RNF216Q9NWF9 866 aaPredicted RBP14.69□□□□□ -0.06
MCM4-213ENST00000521261 NPM3O75607 178 aaKnown RBP14.55□□□□□ -0.08
MCM4-213ENST00000521261 DCAF8L1A6NGE4 600 aa14.39□□□□□ -0.11
MCM4-213ENST00000521261 DNAJC5BQ9UF47 199 aa14.3□□□□□ -0.12
MCM4-213ENST00000521261 EHMT2Q96KQ7 1210 aa14.13□□□□□ -0.15
MCM4-213ENST00000521261 RNF39Q9H2S5 420 aa14.11□□□□□ -0.15
MCM4-213ENST00000521261 SLC4A1APQ9BWU0 796 aaKnown RBP14.02□□□□□ -0.17
MCM4-213ENST00000521261 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.94□□□□□ -0.183e-10■□□□□ 10.6
MCM4-213ENST00000521261 CACNB1Q02641 598 aaPredicted RBP13.89□□□□□ -0.19
MCM4-213ENST00000521261 C1QBPQ07021 282 aaKnown RBP13.89□□□□□ -0.19
MCM4-213ENST00000521261 SLC4A2P04920 1241 aa13.85□□□□□ -0.19
MCM4-213ENST00000521261 U3KPZ7 1027 aaPredicted RBP13.78□□□□□ -0.2
MCM4-213ENST00000521261 CSRNP3Q8WYN3 585 aa13.75□□□□□ -0.21
MCM4-213ENST00000521261 ZBTB22O15209 634 aa13.64□□□□□ -0.23
MCM4-213ENST00000521261 SPINK5Q9NQ38 1064 aaPredicted RBP13.46□□□□□ -0.25
MCM4-213ENST00000521261 FOXD4L1Q9NU39 408 aa13.45□□□□□ -0.26
MCM4-213ENST00000521261 MYCNP04198 464 aaPredicted RBP13.43□□□□□ -0.26
MCM4-213ENST00000521261 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.42□□□□□ -0.26
MCM4-213ENST00000521261 HNRNPUL2Q1KMD3 747 aaKnown RBP13.42□□□□□ -0.26
MCM4-213ENST00000521261 SAMD1Q6SPF0 538 aaPredicted RBP13.38□□□□□ -0.27
MCM4-213ENST00000521261 CAPN15O75808 1086 aa13.36□□□□□ -0.27
MCM4-213ENST00000521261 APLP2Q06481 763 aa13.35□□□□□ -0.27
MCM4-213ENST00000521261 DSG3P32926 999 aa13.3□□□□□ -0.28
MCM4-213ENST00000521261 ZNF219Q9P2Y4 722 aaPredicted RBP13.25□□□□□ -0.29
MCM4-213ENST00000521261 TRHP20396 242 aaPredicted RBP13.21□□□□□ -0.29
MCM4-213ENST00000521261 ATF5Q9Y2D1 282 aaPredicted RBP13.13□□□□□ -0.31
MCM4-213ENST00000521261 ABCB7O75027 752 aa13.1□□□□□ -0.31
MCM4-213ENST00000521261 ATXN8OSP0DMR3 200 aa13.05□□□□□ -0.32
MCM4-213ENST00000521261 POLA2Q14181 598 aa12.95□□□□□ -0.34
MCM4-213ENST00000521261 ZBTB12Q9Y330 459 aaPredicted RBP12.73□□□□□ -0.37
MCM4-213ENST00000521261 RBM42Q9BTD8 480 aaKnown RBP12.63□□□□□ -0.39
MCM4-213ENST00000521261 MKRN4PQ13434 485 aaPredicted RBP12.56□□□□□ -0.4
MCM4-213ENST00000521261 OSCARQ8IYS5 282 aa12.55□□□□□ -0.4
MCM4-213ENST00000521261 FBLN2P98095 1184 aa12.52□□□□□ -0.41
MCM4-213ENST00000521261 AKT1S1Q96B36 256 aa12.43□□□□□ -0.42
MCM4-213ENST00000521261 FKBP8Q14318 412 aa12.4□□□□□ -0.42
MCM4-213ENST00000521261 SPDYE2BA6NHP3 402 aa12.38□□□□□ -0.43
MCM4-213ENST00000521261 SPDYE6P0CI01 402 aa12.38□□□□□ -0.43
MCM4-213ENST00000521261 SPDYE2Q495Y8 402 aa12.38□□□□□ -0.43
MCM4-213ENST00000521261 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
MCM4-213ENST00000521261 SSUH2Q9Y2M2 353 aa12.3□□□□□ -0.44
MCM4-213ENST00000521261 CHRDL2Q6WN34 429 aa12.25□□□□□ -0.45
MCM4-213ENST00000521261 POTEHQ6S545 545 aa12.24□□□□□ -0.45
MCM4-213ENST00000521261 ZNF692Q9BU19 519 aaPredicted RBP12.23□□□□□ -0.45
MCM4-213ENST00000521261 PITPNM1O00562 1244 aa12.18□□□□□ -0.46
MCM4-213ENST00000521261 PABPN1Q86U42 306 aaKnown RBP eCLIP12.08□□□□□ -0.48
MCM4-213ENST00000521261 SPDYE1Q8NFV5 336 aaPredicted RBP12.08□□□□□ -0.48
MCM4-213ENST00000521261 SPDYE4A6NLX3 237 aa12.05□□□□□ -0.48
MCM4-213ENST00000521261 FXR2P51116 673 aaKnown RBP eCLIP12.05□□□□□ -0.481e-8■■■□□ 17.4
MCM4-213ENST00000521261 PIP4P2Q8N4L2 257 aa12.04□□□□□ -0.48
MCM4-213ENST00000521261 CLEC11AQ9Y240 323 aa11.96□□□□□ -0.49
MCM4-213ENST00000521261 PROM2Q8N271 834 aa11.92□□□□□ -0.5
MCM4-213ENST00000521261 RTN4Q9NQC3 1192 aaKnown RBP11.92□□□□□ -0.5
MCM4-213ENST00000521261 PRR29P0C7W0 189 aa11.84□□□□□ -0.51
MCM4-213ENST00000521261 PRKAR2AP13861 404 aaKnown RBP11.84□□□□□ -0.51
MCM4-213ENST00000521261 STAG3Q9UJ98 1225 aa11.81□□□□□ -0.52
MCM4-213ENST00000521261 AMER1Q5JTC6 1135 aaPredicted RBP11.76□□□□□ -0.53
MCM4-213ENST00000521261 CHADLQ6NUI6 762 aa11.76□□□□□ -0.53
MCM4-213ENST00000521261 CREBZFQ9NS37 354 aa11.7□□□□□ -0.54
MCM4-213ENST00000521261 FBXO3Q9UK99 471 aa11.69□□□□□ -0.54
MCM4-213ENST00000521261 HAX1O00165 279 aa11.66□□□□□ -0.54
MCM4-213ENST00000521261 VASPP50552 380 aaPredicted RBP11.65□□□□□ -0.54
MCM4-213ENST00000521261 C19orf67A6NJJ6 358 aa11.64□□□□□ -0.55
MCM4-213ENST00000521261 FARP1Q9Y4F1 1045 aaPredicted RBP11.64□□□□□ -0.55
MCM4-213ENST00000521261 EVX2Q03828 476 aa11.63□□□□□ -0.55
MCM4-213ENST00000521261 SP7Q8TDD2 431 aaPredicted RBP11.61□□□□□ -0.55
MCM4-213ENST00000521261 MNX1P50219 401 aaPredicted RBP11.59□□□□□ -0.55
MCM4-213ENST00000521261 IFNLR1Q8IU57 520 aaPredicted RBP11.58□□□□□ -0.56
MCM4-213ENST00000521261 CD44P16070 742 aaKnown RBP11.47□□□□□ -0.57
MCM4-213ENST00000521261 NPM1P06748 294 aaKnown RBP eCLIP11.42□□□□□ -0.58
MCM4-213ENST00000521261 MIER1Q8N108 512 aa11.4□□□□□ -0.58
MCM4-213ENST00000521261 ZNF579Q8NAF0 562 aaKnown RBP11.37□□□□□ -0.59
MCM4-213ENST00000521261 GABBR2O75899 941 aa11.36□□□□□ -0.59
MCM4-213ENST00000521261 KLHL34Q8N239 644 aa11.36□□□□□ -0.59
MCM4-213ENST00000521261 PLCD3Q8N3E9 789 aa11.36□□□□□ -0.59
MCM4-213ENST00000521261 ZRANB1Q9UGI0 708 aa11.35□□□□□ -0.59
MCM4-213ENST00000521261 PLEKHG5O94827 1062 aa11.34□□□□□ -0.59
MCM4-213ENST00000521261 PKD2Q13563 968 aa11.32□□□□□ -0.6
MCM4-213ENST00000521261 CLCN6P51797 869 aa11.3□□□□□ -0.6
MCM4-213ENST00000521261 PAK3O75914 559 aaPredicted RBP11.29□□□□□ -0.6
MCM4-213ENST00000521261 SPOCK2Q92563 424 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms