Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
UPF3BQ9BZI7 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UPF3BQ9BZI7 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
UPF3BQ9BZI7 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 AC020658.7-201ENST00000624274 2442 ntBASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 USP39-207ENST00000450066 2086 ntTSL 2 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
UPF3BQ9BZI7 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 MIR1908-201ENST00000410394 80 ntBASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 AC079316.1-201ENST00000548397 411 ntBASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 AL583810.1-201ENST00000553344 1045 ntBASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 AC100827.2-201ENST00000563214 1194 ntBASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 AC244093.1-201ENST00000610837 814 ntBASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC17.08■□□□□ 0.32
UPF3BQ9BZI7 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AC144522.1-201ENST00000625111 1658 ntBASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AC131212.3-201ENST00000624087 4219 ntBASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 TUBB1P2-201ENST00000422712 1306 ntBASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 TUBB1P1-201ENST00000503144 1300 ntBASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AC079178.1-201ENST00000420915 656 ntBASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AL160314.3-201ENST00000556041 767 ntBASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AC124068.2-201ENST00000569473 1109 ntBASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AC021016.3-201ENST00000608367 477 ntBASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPF3BQ9BZI7 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms