Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC16.08■□□□□ 0.16
CCNA1P78396 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCNA1P78396 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
CCNA1P78396 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC16.08■□□□□ 0.16
CCNA1P78396 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC16.08■□□□□ 0.16
CCNA1P78396 AP000769.1-203ENST00000637245 208 ntBASIC16.08■□□□□ 0.16
CCNA1P78396 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCNA1P78396 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCNA1P78396 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCNA1P78396 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CCNA1P78396 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
CCNA1P78396 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCNA1P78396 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.08■□□□□ 0.16
CCNA1P78396 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.08■□□□□ 0.16
CCNA1P78396 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC16.08■□□□□ 0.16
CCNA1P78396 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
CCNA1P78396 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.08■□□□□ 0.16
CCNA1P78396 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.08■□□□□ 0.16
CCNA1P78396 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCNA1P78396 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCNA1P78396 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CCNA1P78396 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.07■□□□□ 0.16
CCNA1P78396 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CCNA1P78396 ACTBP14-201ENST00000411655 1089 ntBASIC16.07■□□□□ 0.16
CCNA1P78396 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC16.07■□□□□ 0.16
CCNA1P78396 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.07■□□□□ 0.16
CCNA1P78396 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 CISD2-202ENST00000503643 808 ntTSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.07■□□□□ 0.16
CCNA1P78396 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC16.07■□□□□ 0.16
CCNA1P78396 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC16.07■□□□□ 0.16
CCNA1P78396 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.07■□□□□ 0.16
CCNA1P78396 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC16.07■□□□□ 0.16
CCNA1P78396 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.07■□□□□ 0.16
CCNA1P78396 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CCNA1P78396 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.07■□□□□ 0.16
CCNA1P78396 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.07■□□□□ 0.16
CCNA1P78396 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCNA1P78396 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CCNA1P78396 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CCNA1P78396 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.06■□□□□ 0.16
CCNA1P78396 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCNA1P78396 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.06■□□□□ 0.16
CCNA1P78396 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CCNA1P78396 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.06■□□□□ 0.16
CCNA1P78396 MTHFR-210ENST00000641407 2387 ntBASIC16.06■□□□□ 0.16
CCNA1P78396 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.06■□□□□ 0.16
CCNA1P78396 AL139158.3-201ENST00000641212 1562 ntBASIC16.06■□□□□ 0.16
CCNA1P78396 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 AC117503.4-201ENST00000623229 1418 ntBASIC16.06■□□□□ 0.16
CCNA1P78396 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCNA1P78396 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 USP17L6P-201ENST00000382470 1197 ntBASIC16.06■□□□□ 0.16
CCNA1P78396 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC16.06■□□□□ 0.16
CCNA1P78396 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CCNA1P78396 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC16.06■□□□□ 0.16
CCNA1P78396 FAM21EP-201ENST00000417804 985 ntBASIC16.06■□□□□ 0.16
CCNA1P78396 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC16.06■□□□□ 0.16
CCNA1P78396 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC16.06■□□□□ 0.16
CCNA1P78396 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC16.06■□□□□ 0.16
CCNA1P78396 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 AC106047.2-201ENST00000511723 743 ntBASIC16.06■□□□□ 0.16
CCNA1P78396 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 ABHD17AP9-201ENST00000561925 548 ntBASIC16.06■□□□□ 0.16
CCNA1P78396 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC16.06■□□□□ 0.16
CCNA1P78396 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC16.06■□□□□ 0.16
CCNA1P78396 AP003392.6-201ENST00000607709 325 ntBASIC16.06■□□□□ 0.16
CCNA1P78396 AL139339.2-201ENST00000608063 657 ntBASIC16.06■□□□□ 0.16
CCNA1P78396 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCNA1P78396 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms