Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.82□□□□□ -0.36
CLRN1P58418 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CLRN1P58418 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 KRT8P29-201ENST00000420409 1371 ntBASIC12.81□□□□□ -0.36
CLRN1P58418 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 PTPRVP-205ENST00000641549 5067 ntBASIC12.81□□□□□ -0.36
CLRN1P58418 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 RPF1-202ENST00000370656 724 ntTSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
CLRN1P58418 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 RPL13AP20-201ENST00000459725 609 ntBASIC12.81□□□□□ -0.36
CLRN1P58418 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC12.81□□□□□ -0.36
CLRN1P58418 AC140658.4-201ENST00000561990 352 ntBASIC12.81□□□□□ -0.36
CLRN1P58418 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 OR2I1P-208ENST00000641137 4948 ntBASIC12.81□□□□□ -0.36
CLRN1P58418 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC12.81□□□□□ -0.36
CLRN1P58418 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CLRN1P58418 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.81□□□□□ -0.36
CLRN1P58418 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CLRN1P58418 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
CLRN1P58418 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC12.8□□□□□ -0.36
CLRN1P58418 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC12.8□□□□□ -0.36
CLRN1P58418 MBLAC2-202ENST00000514906 1936 ntBASIC12.8□□□□□ -0.36
CLRN1P58418 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CLRN1P58418 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CLRN1P58418 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CLRN1P58418 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CLRN1P58418 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CLRN1P58418 APOC3-202ENST00000375345 604 ntTSL 5 BASIC12.8□□□□□ -0.36
CLRN1P58418 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC12.8□□□□□ -0.36
CLRN1P58418 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CLRN1P58418 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC12.8□□□□□ -0.36
CLRN1P58418 HNRNPA1P63-201ENST00000427917 963 ntBASIC12.8□□□□□ -0.36
CLRN1P58418 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.8□□□□□ -0.36
CLRN1P58418 RNMTL1P1-201ENST00000454103 560 ntBASIC12.8□□□□□ -0.36
CLRN1P58418 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC12.8□□□□□ -0.36
CLRN1P58418 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms