Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH6P55285 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CDH6P55285 FAM90A7P-201ENST00000382628 1395 ntBASIC14.89□□□□□ -0.03
CDH6P55285 FAM90A23P-201ENST00000400136 1395 ntBASIC14.89□□□□□ -0.03
CDH6P55285 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH6P55285 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH6P55285 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH6P55285 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.89□□□□□ -0.03
CDH6P55285 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CDH6P55285 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CDH6P55285 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CDH6P55285 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC14.89□□□□□ -0.03
CDH6P55285 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CDH6P55285 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH6P55285 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.89□□□□□ -0.03
CDH6P55285 AL008721.1-201ENST00000609964 604 ntBASIC14.89□□□□□ -0.03
CDH6P55285 DIO1-215ENST00000610607 796 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH6P55285 AP000346.4-201ENST00000614827 381 ntBASIC14.89□□□□□ -0.03
CDH6P55285 MIR6752-201ENST00000618442 71 ntBASIC14.89□□□□□ -0.03
CDH6P55285 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CDH6P55285 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH6P55285 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH6P55285 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.89□□□□□ -0.03
CDH6P55285 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH6P55285 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH6P55285 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.89□□□□□ -0.03
CDH6P55285 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.89□□□□□ -0.03
CDH6P55285 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CDH6P55285 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CDH6P55285 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CDH6P55285 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CDH6P55285 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 MEX3B-202ENST00000558133 4333 ntBASIC14.88□□□□□ -0.03
CDH6P55285 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH6P55285 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CDH6P55285 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CDH6P55285 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CDH6P55285 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH6P55285 GOLGA8EP-201ENST00000530246 1959 ntBASIC14.88□□□□□ -0.03
CDH6P55285 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CDH6P55285 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH6P55285 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.88□□□□□ -0.03
CDH6P55285 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH6P55285 XBP1P1-201ENST00000436573 652 ntBASIC14.88□□□□□ -0.03
CDH6P55285 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CDH6P55285 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.88□□□□□ -0.03
CDH6P55285 HLA-J-204ENST00000495278 958 ntBASIC14.88□□□□□ -0.03
CDH6P55285 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.88□□□□□ -0.03
CDH6P55285 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC14.88□□□□□ -0.03
CDH6P55285 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC14.88□□□□□ -0.03
CDH6P55285 DERL2-202ENST00000570848 657 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH6P55285 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH6P55285 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.88□□□□□ -0.03
CDH6P55285 BNIP3P13-201ENST00000599968 566 ntBASIC14.88□□□□□ -0.03
CDH6P55285 AC007663.3-201ENST00000609632 465 ntBASIC14.88□□□□□ -0.03
CDH6P55285 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.88□□□□□ -0.03
CDH6P55285 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH6P55285 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH6P55285 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.88□□□□□ -0.03
CDH6P55285 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH6P55285 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH6P55285 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.88□□□□□ -0.03
CDH6P55285 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CDH6P55285 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CDH6P55285 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CDH6P55285 AC015909.5-201ENST00000624336 2266 ntBASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms