Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 MIR6819-201ENST00000622122 61 ntBASIC16.6■□□□□ 0.25
BRCA1P38398 SLC50A1-214ENST00000622581 1245 ntTSL 5 BASIC16.6■□□□□ 0.25
BRCA1P38398 AC138430.2-201ENST00000624068 504 ntBASIC16.6■□□□□ 0.25
BRCA1P38398 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.6■□□□□ 0.25
BRCA1P38398 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
BRCA1P38398 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
BRCA1P38398 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC16.59■□□□□ 0.25
BRCA1P38398 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC16.59■□□□□ 0.25
BRCA1P38398 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
BRCA1P38398 PLAC9P1-203ENST00000440031 223 ntBASIC16.59■□□□□ 0.25
BRCA1P38398 AP000343.1-201ENST00000440602 385 ntBASIC16.59■□□□□ 0.25
BRCA1P38398 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC16.59■□□□□ 0.25
BRCA1P38398 PDPN-208ENST00000509009 571 ntTSL 4 BASIC16.59■□□□□ 0.25
BRCA1P38398 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC16.59■□□□□ 0.25
BRCA1P38398 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC16.59■□□□□ 0.25
BRCA1P38398 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC16.59■□□□□ 0.25
BRCA1P38398 MIR4526-201ENST00000583168 87 ntBASIC16.59■□□□□ 0.25
BRCA1P38398 TLE2-205ENST00000586422 389 ntTSL 5 BASIC16.59■□□□□ 0.25
BRCA1P38398 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC16.59■□□□□ 0.25
BRCA1P38398 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
BRCA1P38398 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
BRCA1P38398 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC16.59■□□□□ 0.25
BRCA1P38398 AF013593.1-201ENST00000458074 1487 ntBASIC16.59■□□□□ 0.25
BRCA1P38398 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.59■□□□□ 0.25
BRCA1P38398 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 AC024475.2-201ENST00000312173 879 ntBASIC16.59■□□□□ 0.25
BRCA1P38398 SNORD23-201ENST00000408876 110 ntBASIC16.59■□□□□ 0.25
BRCA1P38398 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC16.59■□□□□ 0.25
BRCA1P38398 BICD1P1-201ENST00000457832 1222 ntBASIC16.59■□□□□ 0.25
BRCA1P38398 AC044802.2-201ENST00000551187 434 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BRCA1P38398 IFI27L1-203ENST00000553664 647 ntTSL 5 BASIC16.59■□□□□ 0.25
BRCA1P38398 AC116552.1-201ENST00000563243 733 ntTSL 3 BASIC16.59■□□□□ 0.25
BRCA1P38398 RN7SL460P-201ENST00000582806 258 ntBASIC16.59■□□□□ 0.25
BRCA1P38398 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC16.59■□□□□ 0.25
BRCA1P38398 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
BRCA1P38398 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.58■□□□□ 0.25
BRCA1P38398 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
BRCA1P38398 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
BRCA1P38398 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC16.58■□□□□ 0.25
BRCA1P38398 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BRCA1P38398 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BRCA1P38398 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC16.58■□□□□ 0.25
BRCA1P38398 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
BRCA1P38398 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.58■□□□□ 0.24
BRCA1P38398 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.58■□□□□ 0.24
BRCA1P38398 AL031587.5-201ENST00000624344 1849 ntBASIC16.58■□□□□ 0.24
BRCA1P38398 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BRCA1P38398 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BRCA1P38398 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
BRCA1P38398 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BRCA1P38398 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BRCA1P38398 GSTM2P1-201ENST00000405166 654 ntBASIC16.58■□□□□ 0.24
BRCA1P38398 AC064853.1-201ENST00000413096 540 ntTSL 4 BASIC16.58■□□□□ 0.24
BRCA1P38398 AP000346.2-202ENST00000425948 383 ntBASIC16.58■□□□□ 0.24
BRCA1P38398 AC012513.2-201ENST00000441511 1137 ntBASIC16.58■□□□□ 0.24
BRCA1P38398 HNRNPA1P9-201ENST00000450624 950 ntBASIC16.58■□□□□ 0.24
BRCA1P38398 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC16.58■□□□□ 0.24
BRCA1P38398 ABCC6P2-201ENST00000526069 590 ntBASIC16.58■□□□□ 0.24
BRCA1P38398 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC16.58■□□□□ 0.24
BRCA1P38398 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC16.58■□□□□ 0.24
BRCA1P38398 AC008894.2-202ENST00000599676 1027 ntTSL 3 BASIC16.58■□□□□ 0.24
BRCA1P38398 AL109983.1-201ENST00000603234 646 ntBASIC16.58■□□□□ 0.24
BRCA1P38398 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
BRCA1P38398 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
BRCA1P38398 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BRCA1P38398 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
BRCA1P38398 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.57■□□□□ 0.24
BRCA1P38398 TAGLN2-201ENST00000320307 709 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
BRCA1P38398 AL391903.1-201ENST00000407513 365 ntBASIC16.57■□□□□ 0.24
BRCA1P38398 RAB34-211ENST00000450529 1184 ntTSL 2 BASIC16.57■□□□□ 0.24
BRCA1P38398 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
BRCA1P38398 AL033381.2-201ENST00000603854 732 ntBASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms