Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HOXA3O43365 HLA-DQB1-202ENST00000399079 1501 ntBASIC11.54□□□□□ -0.56
HOXA3O43365 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HOXA3O43365 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC11.54□□□□□ -0.56
HOXA3O43365 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HOXA3O43365 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HOXA3O43365 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
HOXA3O43365 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HOXA3O43365 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
HOXA3O43365 AC007686.3-201ENST00000619017 3487 ntBASIC11.54□□□□□ -0.56
HOXA3O43365 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
HOXA3O43365 GSN-215ENST00000545652 2428 ntTSL 2 BASIC11.54□□□□□ -0.56
HOXA3O43365 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC11.54□□□□□ -0.56
HOXA3O43365 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 RER1-203ENST00000378513 3000 ntTSL 3 BASIC11.53□□□□□ -0.56
HOXA3O43365 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 AC073869.2-201ENST00000417338 1026 ntBASIC11.53□□□□□ -0.56
HOXA3O43365 PFN2-202ENST00000423691 911 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC11.53□□□□□ -0.56
HOXA3O43365 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC11.53□□□□□ -0.56
HOXA3O43365 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 DNM1P30-201ENST00000563586 452 ntBASIC11.53□□□□□ -0.56
HOXA3O43365 RPL17P45-201ENST00000586289 509 ntBASIC11.53□□□□□ -0.56
HOXA3O43365 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
HOXA3O43365 AC009560.1-201ENST00000620208 434 ntBASIC11.53□□□□□ -0.56
HOXA3O43365 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC11.53□□□□□ -0.56
HOXA3O43365 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
HOXA3O43365 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC11.53□□□□□ -0.56
HOXA3O43365 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC11.53□□□□□ -0.56
HOXA3O43365 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 AC079781.5-202ENST00000641784 3743 ntBASIC11.52□□□□□ -0.56
HOXA3O43365 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.52□□□□□ -0.56
HOXA3O43365 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.56
HOXA3O43365 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 CICP24-201ENST00000605464 2705 ntBASIC11.52□□□□□ -0.56
HOXA3O43365 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC11.52□□□□□ -0.56
HOXA3O43365 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
HOXA3O43365 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC11.52□□□□□ -0.56
HOXA3O43365 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.56
HOXA3O43365 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC11.52□□□□□ -0.56
HOXA3O43365 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
HOXA3O43365 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC11.52□□□□□ -0.56
HOXA3O43365 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HOXA3O43365 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC11.52□□□□□ -0.56
HOXA3O43365 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HOXA3O43365 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC11.52□□□□□ -0.57
HOXA3O43365 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms