Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
VRK1Q99986 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VRK1Q99986 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
VRK1Q99986 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC12.78□□□□□ -0.36
VRK1Q99986 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.78□□□□□ -0.36
VRK1Q99986 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.78□□□□□ -0.36
VRK1Q99986 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.78□□□□□ -0.36
VRK1Q99986 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VRK1Q99986 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
VRK1Q99986 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.78□□□□□ -0.36
VRK1Q99986 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
VRK1Q99986 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC12.77□□□□□ -0.36
VRK1Q99986 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VRK1Q99986 AC011700.1-201ENST00000610409 2627 ntBASIC12.77□□□□□ -0.36
VRK1Q99986 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC12.77□□□□□ -0.36
VRK1Q99986 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
VRK1Q99986 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VRK1Q99986 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VRK1Q99986 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VRK1Q99986 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VRK1Q99986 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC12.77□□□□□ -0.36
VRK1Q99986 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VRK1Q99986 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
VRK1Q99986 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.36
VRK1Q99986 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
VRK1Q99986 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.36
VRK1Q99986 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.77□□□□□ -0.37
VRK1Q99986 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.77□□□□□ -0.37
VRK1Q99986 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.77□□□□□ -0.37
VRK1Q99986 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.77□□□□□ -0.37
VRK1Q99986 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
VRK1Q99986 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 HNRNPA1P63-201ENST00000427917 963 ntBASIC12.77□□□□□ -0.37
VRK1Q99986 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.77□□□□□ -0.37
VRK1Q99986 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.77□□□□□ -0.37
VRK1Q99986 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC12.77□□□□□ -0.37
VRK1Q99986 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC12.77□□□□□ -0.37
VRK1Q99986 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC12.77□□□□□ -0.37
VRK1Q99986 AC021723.1-201ENST00000486306 515 ntBASIC12.77□□□□□ -0.37
VRK1Q99986 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC12.77□□□□□ -0.37
VRK1Q99986 MESTP3-201ENST00000503460 968 ntBASIC12.77□□□□□ -0.37
VRK1Q99986 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
VRK1Q99986 NCK2-206ENST00000522586 490 ntTSL 5 BASIC12.77□□□□□ -0.37
VRK1Q99986 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC12.77□□□□□ -0.37
VRK1Q99986 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.77□□□□□ -0.37
VRK1Q99986 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC12.77□□□□□ -0.37
VRK1Q99986 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.77□□□□□ -0.37
VRK1Q99986 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
VRK1Q99986 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
VRK1Q99986 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
VRK1Q99986 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
VRK1Q99986 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VRK1Q99986 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
VRK1Q99986 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.76□□□□□ -0.37
VRK1Q99986 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.76□□□□□ -0.37
VRK1Q99986 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
VRK1Q99986 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.76□□□□□ -0.37
VRK1Q99986 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
VRK1Q99986 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.76□□□□□ -0.37
VRK1Q99986 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
VRK1Q99986 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
VRK1Q99986 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC12.76□□□□□ -0.37
VRK1Q99986 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
VRK1Q99986 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
VRK1Q99986 AC015909.5-201ENST00000624336 2266 ntBASIC12.76□□□□□ -0.37
VRK1Q99986 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VRK1Q99986 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms