Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
USB1Q9BQ65 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.07□□□□□ -0.32
USB1Q9BQ65 AL157414.3-201ENST00000624276 1954 ntBASIC13.07□□□□□ -0.32
USB1Q9BQ65 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.07□□□□□ -0.32
USB1Q9BQ65 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
USB1Q9BQ65 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
USB1Q9BQ65 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC13.07□□□□□ -0.32
USB1Q9BQ65 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
USB1Q9BQ65 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AL118506.1-201ENST00000601296 3082 ntBASIC13.06□□□□□ -0.32
USB1Q9BQ65 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 OR4B1-201ENST00000309562 930 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 OR4C5-201ENST00000319813 981 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 UBE2D3-202ENST00000338145 896 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 DCUN1D2-AS-201ENST00000414992 330 ntTSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AC093534.1-201ENST00000504977 132 ntBASIC13.06□□□□□ -0.32
USB1Q9BQ65 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AL590133.2-202ENST00000561111 642 ntTSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AC011458.1-201ENST00000604034 617 ntBASIC13.06□□□□□ -0.32
USB1Q9BQ65 AL118558.3-201ENST00000607414 1079 ntBASIC13.06□□□□□ -0.32
USB1Q9BQ65 OR5AR1-201ENST00000624596 1026 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AL133338.1-201ENST00000565695 1517 ntBASIC13.06□□□□□ -0.32
USB1Q9BQ65 AL035563.1-201ENST00000609087 1539 ntBASIC13.06□□□□□ -0.32
USB1Q9BQ65 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 AMT-221ENST00000538581 2038 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
USB1Q9BQ65 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.06□□□□□ -0.32
USB1Q9BQ65 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 SNTG1-202ENST00000518864 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 FGD5P1-202ENST00000614866 2498 ntBASIC13.05□□□□□ -0.32
USB1Q9BQ65 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
USB1Q9BQ65 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC13.05□□□□□ -0.32
USB1Q9BQ65 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms