Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 AL591122.2-201ENST00000624125 1853 ntBASIC15.42■□□□□ 0.06
LRCH3Q96II8 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 AP002353.1-201ENST00000528257 1599 ntBASIC15.42■□□□□ 0.06
LRCH3Q96II8 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 RN7SL128P-201ENST00000467883 305 ntBASIC15.42■□□□□ 0.06
LRCH3Q96II8 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 AC087203.1-201ENST00000532111 1181 ntBASIC15.42■□□□□ 0.06
LRCH3Q96II8 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LRCH3Q96II8 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LRCH3Q96II8 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 TCAF2P1-201ENST00000291129 2421 ntBASIC15.41■□□□□ 0.06
LRCH3Q96II8 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 RN7SL767P-201ENST00000493013 295 ntBASIC15.41■□□□□ 0.06
LRCH3Q96II8 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 GCOM2-201ENST00000509133 1104 ntBASIC15.41■□□□□ 0.06
LRCH3Q96II8 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 AC004923.3-201ENST00000527532 355 ntBASIC15.41■□□□□ 0.06
LRCH3Q96II8 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 CLPP-205ENST00000596605 646 ntTSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 SALL4P5-201ENST00000419001 1760 ntBASIC15.41■□□□□ 0.06
LRCH3Q96II8 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LRCH3Q96II8 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
LRCH3Q96II8 AC023908.3-201ENST00000564211 3047 ntBASIC15.41■□□□□ 0.06
LRCH3Q96II8 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC007952.5-201ENST00000572818 1486 ntBASIC15.4■□□□□ 0.06
LRCH3Q96II8 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC112693.3-201ENST00000624819 1983 ntBASIC15.4■□□□□ 0.06
LRCH3Q96II8 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms