Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.72□□□□□ -0.21
MSX2P35548 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
MSX2P35548 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 SNHG9-202ENST00000564014 471 ntBASIC13.72□□□□□ -0.21
MSX2P35548 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 BX088702.1-201ENST00000610784 235 ntBASIC13.72□□□□□ -0.21
MSX2P35548 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC13.72□□□□□ -0.21
MSX2P35548 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 AC092117.1-201ENST00000621230 3250 ntBASIC13.72□□□□□ -0.21
MSX2P35548 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC13.72□□□□□ -0.21
MSX2P35548 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
MSX2P35548 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
MSX2P35548 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC13.72□□□□□ -0.21
MSX2P35548 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
MSX2P35548 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX2P35548 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX2P35548 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX2P35548 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
MSX2P35548 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 GOLGA2P5-201ENST00000266746 2395 ntBASIC13.71□□□□□ -0.21
MSX2P35548 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.71□□□□□ -0.21
MSX2P35548 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC13.71□□□□□ -0.21
MSX2P35548 USP17L6P-201ENST00000382470 1197 ntBASIC13.71□□□□□ -0.21
MSX2P35548 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX2P35548 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 TSEN15P1-201ENST00000423257 515 ntBASIC13.71□□□□□ -0.21
MSX2P35548 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.71□□□□□ -0.21
MSX2P35548 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX2P35548 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 AC241585.1-201ENST00000433527 519 ntBASIC13.71□□□□□ -0.21
MSX2P35548 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX2P35548 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.71□□□□□ -0.21
MSX2P35548 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.71□□□□□ -0.21
MSX2P35548 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.71□□□□□ -0.21
MSX2P35548 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.71□□□□□ -0.21
MSX2P35548 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.71□□□□□ -0.21
MSX2P35548 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 CASC4-202ENST00000345795 3764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX2P35548 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC13.71□□□□□ -0.21
MSX2P35548 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX2P35548 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC13.71□□□□□ -0.22
MSX2P35548 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
MSX2P35548 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
MSX2P35548 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.71□□□□□ -0.22
MSX2P35548 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX2P35548 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.71□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms