Protein–RNA interactions for Protein: P35452

HOXD12, Homeobox protein Hox-D12, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD12P35452 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 WASH3P-207ENST00000560956 1394 ntBASIC14.37□□□□□ -0.11
HOXD12P35452 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD12P35452 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD12P35452 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD12P35452 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
HOXD12P35452 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
HOXD12P35452 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD12P35452 AL512306.1-201ENST00000432698 848 ntBASIC14.37□□□□□ -0.11
HOXD12P35452 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC14.37□□□□□ -0.11
HOXD12P35452 AL139008.1-201ENST00000437894 228 ntBASIC14.37□□□□□ -0.11
HOXD12P35452 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.37□□□□□ -0.11
HOXD12P35452 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.37□□□□□ -0.11
HOXD12P35452 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 KRT8P1-201ENST00000557533 1207 ntBASIC14.37□□□□□ -0.11
HOXD12P35452 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
HOXD12P35452 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD12P35452 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
HOXD12P35452 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
HOXD12P35452 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXD12P35452 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
HOXD12P35452 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
HOXD12P35452 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD12P35452 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HOXD12P35452 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXD12P35452 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXD12P35452 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 SSR4P1-203ENST00000599569 2260 ntBASIC14.36□□□□□ -0.11
HOXD12P35452 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXD12P35452 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
HOXD12P35452 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 AC131902.2-201ENST00000566892 2172 ntBASIC14.36□□□□□ -0.11
HOXD12P35452 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HOXD12P35452 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HOXD12P35452 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HOXD12P35452 AL590440.2-201ENST00000641973 1595 ntBASIC14.36□□□□□ -0.11
HOXD12P35452 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
HOXD12P35452 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD12P35452 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXD12P35452 NSD1-211ENST00000511258 809 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD12P35452 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 MT3-203ENST00000565838 421 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD12P35452 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC14.36□□□□□ -0.11
HOXD12P35452 AL022344.2-201ENST00000568976 968 ntBASIC14.36□□□□□ -0.11
HOXD12P35452 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC14.36□□□□□ -0.11
HOXD12P35452 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC14.36□□□□□ -0.11
HOXD12P35452 AC138466.4-201ENST00000623965 852 ntBASIC14.36□□□□□ -0.11
HOXD12P35452 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HOXD12P35452 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 AP000845.1-201ENST00000581677 2131 ntBASIC14.36□□□□□ -0.11
HOXD12P35452 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.36□□□□□ -0.11
HOXD12P35452 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 MRPL37P1-201ENST00000592451 1337 ntBASIC14.36□□□□□ -0.11
HOXD12P35452 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.36□□□□□ -0.11
HOXD12P35452 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HOXD12P35452 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms