Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC12.51□□□□□ -0.41
COL8A1P27658 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC12.51□□□□□ -0.41
COL8A1P27658 AC254633.1-201ENST00000606790 345 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 AC004466.2-201ENST00000614749 516 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 AC090510.3-201ENST00000615831 821 ntBASIC12.51□□□□□ -0.41
COL8A1P27658 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC12.51□□□□□ -0.41
COL8A1P27658 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC12.51□□□□□ -0.41
COL8A1P27658 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
COL8A1P27658 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC12.51□□□□□ -0.41
COL8A1P27658 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL8A1P27658 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.51□□□□□ -0.41
COL8A1P27658 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
COL8A1P27658 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.5□□□□□ -0.41
COL8A1P27658 ABR-205ENST00000544583 5595 ntTSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
COL8A1P27658 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
COL8A1P27658 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
COL8A1P27658 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC12.5□□□□□ -0.41
COL8A1P27658 CASP2-203ENST00000392925 616 ntTSL 3 BASIC12.5□□□□□ -0.41
COL8A1P27658 AP000354.1-201ENST00000396982 456 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC12.5□□□□□ -0.41
COL8A1P27658 AC104961.1-201ENST00000427605 771 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC12.5□□□□□ -0.41
COL8A1P27658 RN7SL846P-201ENST00000467429 292 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 AC010181.2-201ENST00000483759 482 ntTSL 3 BASIC12.5□□□□□ -0.41
COL8A1P27658 VENTXP3-201ENST00000546480 773 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 RN7SL371P-201ENST00000578099 267 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 RN7SL665P-201ENST00000578793 300 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 AP000769.1-203ENST00000637245 208 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 AC126335.2-201ENST00000623362 4637 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 AL591122.2-201ENST00000624125 1853 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC12.5□□□□□ -0.41
COL8A1P27658 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 AC023090.2-201ENST00000625182 2110 ntBASIC12.5□□□□□ -0.41
COL8A1P27658 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC12.5□□□□□ -0.41
COL8A1P27658 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
COL8A1P27658 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL8A1P27658 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
COL8A1P27658 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC12.49□□□□□ -0.41
COL8A1P27658 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL8A1P27658 TNRC18P2-201ENST00000417666 2714 ntBASIC12.49□□□□□ -0.41
COL8A1P27658 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL8A1P27658 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms