Protein–RNA interactions for Protein: P25067

COL8A2, Collagen alpha-2(VIII) chain, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A2P25067 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL8A2P25067 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
COL8A2P25067 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
COL8A2P25067 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL8A2P25067 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL8A2P25067 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
COL8A2P25067 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL8A2P25067 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.11□□□□□ -0.47
COL8A2P25067 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
COL8A2P25067 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
COL8A2P25067 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
COL8A2P25067 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
COL8A2P25067 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
COL8A2P25067 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
COL8A2P25067 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC12.11□□□□□ -0.47
COL8A2P25067 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC12.11□□□□□ -0.47
COL8A2P25067 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 KRT17P5-201ENST00000332088 839 ntBASIC12.11□□□□□ -0.47
COL8A2P25067 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 FGFR3P1-201ENST00000449999 601 ntBASIC12.11□□□□□ -0.47
COL8A2P25067 TPT1P11-201ENST00000458482 498 ntBASIC12.11□□□□□ -0.47
COL8A2P25067 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC12.11□□□□□ -0.47
COL8A2P25067 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC12.11□□□□□ -0.47
COL8A2P25067 AC019193.1-201ENST00000506678 823 ntBASIC12.11□□□□□ -0.47
COL8A2P25067 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC12.11□□□□□ -0.47
COL8A2P25067 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC12.11□□□□□ -0.47
COL8A2P25067 AC103691.2-201ENST00000618824 433 ntBASIC12.11□□□□□ -0.47
COL8A2P25067 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
COL8A2P25067 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
COL8A2P25067 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
COL8A2P25067 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
COL8A2P25067 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 AC006480.2-201ENST00000609770 1337 ntBASIC12.11□□□□□ -0.47
COL8A2P25067 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL8A2P25067 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
COL8A2P25067 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
COL8A2P25067 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
COL8A2P25067 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.1□□□□□ -0.47
COL8A2P25067 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
COL8A2P25067 OR2I1P-210ENST00000642037 4691 ntBASIC12.1□□□□□ -0.47
COL8A2P25067 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC12.1□□□□□ -0.47
COL8A2P25067 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
COL8A2P25067 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
COL8A2P25067 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC12.1□□□□□ -0.47
COL8A2P25067 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
COL8A2P25067 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.1□□□□□ -0.47
COL8A2P25067 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
COL8A2P25067 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
COL8A2P25067 AC026316.1-201ENST00000398900 414 ntBASIC12.1□□□□□ -0.47
COL8A2P25067 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.1□□□□□ -0.47
COL8A2P25067 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC12.1□□□□□ -0.47
COL8A2P25067 AL807761.2-201ENST00000422849 729 ntBASIC12.1□□□□□ -0.47
COL8A2P25067 AL592076.1-201ENST00000424448 303 ntBASIC12.1□□□□□ -0.47
COL8A2P25067 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.1□□□□□ -0.47
COL8A2P25067 TMEM198B-204ENST00000484016 896 ntBASIC12.1□□□□□ -0.47
COL8A2P25067 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC12.1□□□□□ -0.47
COL8A2P25067 CD164-210ENST00000512821 964 ntTSL 2 BASIC12.1□□□□□ -0.47
COL8A2P25067 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
COL8A2P25067 CFL1-214ENST00000534769 758 ntTSL 2 BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms