Protein–RNA interactions for Protein: Q9Y5F2

PCDHB11, Protocadherin beta-11, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11Q9Y5F2 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHB11Q9Y5F2 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
PCDHB11Q9Y5F2 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC22.09■■□□□ 1.13
PCDHB11Q9Y5F2 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.09■■□□□ 1.13
PCDHB11Q9Y5F2 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
PCDHB11Q9Y5F2 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
PCDHB11Q9Y5F2 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
PCDHB11Q9Y5F2 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.09■■□□□ 1.13
PCDHB11Q9Y5F2 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.08■■□□□ 1.13
PCDHB11Q9Y5F2 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
PCDHB11Q9Y5F2 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHB11Q9Y5F2 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.08■■□□□ 1.12
PCDHB11Q9Y5F2 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
PCDHB11Q9Y5F2 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 UNC93B3-201ENST00000308076 687 ntBASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 SRD5A1P1-201ENST00000442297 786 ntBASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 AC004812.2-201ENST00000611079 2094 ntBASIC22.07■■□□□ 1.12
PCDHB11Q9Y5F2 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 AL136162.1-201ENST00000607711 1078 ntBASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 ALDH1A3-203ENST00000557963 1670 ntBASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.06■■□□□ 1.12
PCDHB11Q9Y5F2 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHB11Q9Y5F2 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
PCDHB11Q9Y5F2 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
PCDHB11Q9Y5F2 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHB11Q9Y5F2 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHB11Q9Y5F2 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC22.05■■□□□ 1.12
PCDHB11Q9Y5F2 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHB11Q9Y5F2 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
PCDHB11Q9Y5F2 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHB11Q9Y5F2 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHB11Q9Y5F2 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.04■■□□□ 1.12
PCDHB11Q9Y5F2 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
PCDHB11Q9Y5F2 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHB11Q9Y5F2 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHB11Q9Y5F2 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.04■■□□□ 1.12
PCDHB11Q9Y5F2 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PCDHB11Q9Y5F2 AC135279.3-201ENST00000610945 1311 ntBASIC22.04■■□□□ 1.12
PCDHB11Q9Y5F2 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 ZNRF2P3-201ENST00000424200 374 ntBASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PCDHB11Q9Y5F2 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHB11Q9Y5F2 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PCDHB11Q9Y5F2 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.02■■□□□ 1.12
PCDHB11Q9Y5F2 RARRES2P6-201ENST00000567333 442 ntBASIC22.02■■□□□ 1.12
PCDHB11Q9Y5F2 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
PCDHB11Q9Y5F2 AC005703.6-201ENST00000623265 1329 ntBASIC22.02■■□□□ 1.12
PCDHB11Q9Y5F2 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.02■■□□□ 1.11
PCDHB11Q9Y5F2 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB11Q9Y5F2 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB11Q9Y5F2 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB11Q9Y5F2 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB11Q9Y5F2 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.01■■□□□ 1.11
PCDHB11Q9Y5F2 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
PCDHB11Q9Y5F2 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB11Q9Y5F2 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PCDHB11Q9Y5F2 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms