Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NPAS1Q99742 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPAS1Q99742 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPAS1Q99742 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NPAS1Q99742 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NPAS1Q99742 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.58■□□□□ 0.89
NPAS1Q99742 AL117332.1-201ENST00000622628 974 ntBASIC20.58■□□□□ 0.89
NPAS1Q99742 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
NPAS1Q99742 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NPAS1Q99742 AC005703.6-201ENST00000623265 1329 ntBASIC20.57■□□□□ 0.88
NPAS1Q99742 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPAS1Q99742 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NPAS1Q99742 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.57■□□□□ 0.88
NPAS1Q99742 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPAS1Q99742 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.57■□□□□ 0.88
NPAS1Q99742 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NPAS1Q99742 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.57■□□□□ 0.88
NPAS1Q99742 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
NPAS1Q99742 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
NPAS1Q99742 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
NPAS1Q99742 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.57■□□□□ 0.88
NPAS1Q99742 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS1Q99742 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS1Q99742 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NPAS1Q99742 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
NPAS1Q99742 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS1Q99742 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS1Q99742 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS1Q99742 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
NPAS1Q99742 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.56■□□□□ 0.88
NPAS1Q99742 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.56■□□□□ 0.88
NPAS1Q99742 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
NPAS1Q99742 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NPAS1Q99742 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
NPAS1Q99742 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
NPAS1Q99742 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.55■□□□□ 0.88
NPAS1Q99742 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPAS1Q99742 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
NPAS1Q99742 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.55■□□□□ 0.88
NPAS1Q99742 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.55■□□□□ 0.88
NPAS1Q99742 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.55■□□□□ 0.88
NPAS1Q99742 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 AC131212.1-201ENST00000613771 668 ntBASIC20.55■□□□□ 0.88
NPAS1Q99742 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.55■□□□□ 0.88
NPAS1Q99742 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPAS1Q99742 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPAS1Q99742 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NPAS1Q99742 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.55■□□□□ 0.88
NPAS1Q99742 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
NPAS1Q99742 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS1Q99742 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS1Q99742 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
NPAS1Q99742 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
NPAS1Q99742 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.54■□□□□ 0.88
NPAS1Q99742 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS1Q99742 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS1Q99742 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPAS1Q99742 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
NPAS1Q99742 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS1Q99742 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS1Q99742 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
NPAS1Q99742 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS1Q99742 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS1Q99742 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS1Q99742 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS1Q99742 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS1Q99742 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.53■□□□□ 0.88
NPAS1Q99742 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.53■□□□□ 0.88
NPAS1Q99742 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NPAS1Q99742 MIR3621-201ENST00000580529 85 ntBASIC20.53■□□□□ 0.88
NPAS1Q99742 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
NPAS1Q99742 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.53■□□□□ 0.88
NPAS1Q99742 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS1Q99742 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.53■□□□□ 0.88
NPAS1Q99742 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.53■□□□□ 0.88
NPAS1Q99742 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPAS1Q99742 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.53■□□□□ 0.88
NPAS1Q99742 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS1Q99742 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS1Q99742 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS1Q99742 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS1Q99742 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.52■□□□□ 0.88
NPAS1Q99742 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS1Q99742 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPAS1Q99742 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NPAS1Q99742 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.52■□□□□ 0.87
NPAS1Q99742 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPAS1Q99742 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NPAS1Q99742 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.51■□□□□ 0.87
NPAS1Q99742 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
NPAS1Q99742 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NPAS1Q99742 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms