Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
RTF1Q92541 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
RTF1Q92541 SUDS3P1-201ENST00000505831 966 ntBASIC29.59■■■□□ 2.33
RTF1Q92541 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC29.59■■■□□ 2.33
RTF1Q92541 AL138724.1-201ENST00000606771 1088 ntBASIC29.59■■■□□ 2.33
RTF1Q92541 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
RTF1Q92541 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
RTF1Q92541 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
RTF1Q92541 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC29.59■■■□□ 2.33
RTF1Q92541 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
RTF1Q92541 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
RTF1Q92541 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
RTF1Q92541 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
RTF1Q92541 AC006455.2-201ENST00000429931 906 ntBASIC29.58■■■□□ 2.33
RTF1Q92541 LINC00543-201ENST00000567234 1845 ntBASIC29.58■■■□□ 2.33
RTF1Q92541 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC29.58■■■□□ 2.33
RTF1Q92541 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
RTF1Q92541 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC29.57■■■□□ 2.32
RTF1Q92541 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
RTF1Q92541 PTMA-205ENST00000410064 814 ntTSL 2 BASIC29.57■■■□□ 2.32
RTF1Q92541 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC29.57■■■□□ 2.32
RTF1Q92541 MIR4767-201ENST00000582827 78 ntBASIC29.57■■■□□ 2.32
RTF1Q92541 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
RTF1Q92541 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC29.56■■■□□ 2.32
RTF1Q92541 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
RTF1Q92541 GRAMD4P4-201ENST00000613563 1115 ntBASIC29.56■■■□□ 2.32
RTF1Q92541 AC011298.3-201ENST00000615796 283 ntBASIC29.56■■■□□ 2.32
RTF1Q92541 AL139125.2-201ENST00000623134 1869 ntBASIC29.56■■■□□ 2.32
RTF1Q92541 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
RTF1Q92541 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC29.56■■■□□ 2.32
RTF1Q92541 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC29.55■■■□□ 2.32
RTF1Q92541 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC29.55■■■□□ 2.32
RTF1Q92541 EBPL-204ENST00000378272 766 ntTSL 3 BASIC29.55■■■□□ 2.32
RTF1Q92541 MIR935-201ENST00000401179 91 ntBASIC29.55■■■□□ 2.32
RTF1Q92541 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC29.55■■■□□ 2.32
RTF1Q92541 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
RTF1Q92541 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC29.55■■■□□ 2.32
RTF1Q92541 HES6-206ENST00000409574 738 ntTSL 2 BASIC29.54■■■□□ 2.32
RTF1Q92541 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
RTF1Q92541 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC29.54■■■□□ 2.32
RTF1Q92541 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC29.54■■■□□ 2.32
RTF1Q92541 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
RTF1Q92541 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC29.54■■■□□ 2.32
RTF1Q92541 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC29.54■■■□□ 2.32
RTF1Q92541 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC29.54■■■□□ 2.32
RTF1Q92541 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
RTF1Q92541 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
RTF1Q92541 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC29.53■■■□□ 2.32
RTF1Q92541 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC29.53■■■□□ 2.32
RTF1Q92541 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC29.53■■■□□ 2.32
RTF1Q92541 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
RTF1Q92541 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC29.53■■■□□ 2.32
RTF1Q92541 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC29.53■■■□□ 2.32
RTF1Q92541 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RTF1Q92541 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
RTF1Q92541 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC29.52■■■□□ 2.32
RTF1Q92541 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
RTF1Q92541 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RTF1Q92541 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RTF1Q92541 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RTF1Q92541 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC29.52■■■□□ 2.32
RTF1Q92541 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RTF1Q92541 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.32
RTF1Q92541 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.32
RTF1Q92541 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
RTF1Q92541 AF213884.3-201ENST00000563833 479 ntBASIC29.51■■■□□ 2.31
RTF1Q92541 MIR3181-201ENST00000578512 73 ntBASIC29.51■■■□□ 2.31
RTF1Q92541 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
RTF1Q92541 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
RTF1Q92541 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
RTF1Q92541 SHD-204ENST00000599689 1729 ntTSL 5 BASIC29.51■■■□□ 2.31
RTF1Q92541 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
RTF1Q92541 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
RTF1Q92541 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
RTF1Q92541 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
RTF1Q92541 AL136967.2-201ENST00000623968 743 ntBASIC29.5■■■□□ 2.31
RTF1Q92541 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
RTF1Q92541 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
RTF1Q92541 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC29.5■■■□□ 2.31
RTF1Q92541 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
RTF1Q92541 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
RTF1Q92541 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
RTF1Q92541 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
RTF1Q92541 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
RTF1Q92541 AP001330.3-201ENST00000520123 633 ntBASIC29.49■■■□□ 2.31
RTF1Q92541 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC29.49■■■□□ 2.31
RTF1Q92541 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
RTF1Q92541 MIR939-201ENST00000401314 82 ntBASIC29.48■■■□□ 2.31
RTF1Q92541 ASB1-202ENST00000409297 878 ntTSL 5 BASIC29.48■■■□□ 2.31
RTF1Q92541 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC29.48■■■□□ 2.31
RTF1Q92541 AC136469.2-201ENST00000623944 1028 ntBASIC29.48■■■□□ 2.31
RTF1Q92541 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC29.48■■■□□ 2.31
RTF1Q92541 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
RTF1Q92541 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC29.47■■■□□ 2.31
RTF1Q92541 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
RTF1Q92541 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
RTF1Q92541 HYI-206ENST00000372434 1025 ntTSL 5 BASIC29.47■■■□□ 2.31
RTF1Q92541 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC29.47■■■□□ 2.31
RTF1Q92541 pRNA.6-201ENST00000610482 90 ntBASIC29.47■■■□□ 2.31
RTF1Q92541 pRNA.5-201ENST00000612139 90 ntBASIC29.47■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms