Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLHC1Q8NHS4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLHC1Q8NHS4 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CLHC1Q8NHS4 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLHC1Q8NHS4 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 C1orf229-201ENST00000623686 2258 ntBASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLHC1Q8NHS4 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLHC1Q8NHS4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CLHC1Q8NHS4 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CLHC1Q8NHS4 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
CLHC1Q8NHS4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLHC1Q8NHS4 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CLHC1Q8NHS4 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLHC1Q8NHS4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CLHC1Q8NHS4 AC103834.1-201ENST00000520383 144 ntBASIC21.58■■□□□ 1.05
CLHC1Q8NHS4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.58■■□□□ 1.05
CLHC1Q8NHS4 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.58■■□□□ 1.04
CLHC1Q8NHS4 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLHC1Q8NHS4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 MIR4508-201ENST00000584178 70 ntBASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLHC1Q8NHS4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 AC233723.2-201ENST00000623798 2106 ntBASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLHC1Q8NHS4 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 AC004448.1-201ENST00000458332 883 ntBASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLHC1Q8NHS4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms