Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.697e-13■■■■□ 20
DDX55Q8NHQ9 EDA-206ENST00000503592 557 ntTSL 58.47□□□□□ -1.057e-13■■■■□ 20
DDX55Q8NHQ9 EDA-207ENST00000510681 536 ntTSL 44.78□□□□□ -1.647e-13■■■■□ 20
DDX55Q8NHQ9 EDA-211ENST00000530321 339 ntTSL 23.98□□□□□ -1.777e-13■■■■□ 20
DDX55Q8NHQ9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.823e-7■■■■□ 20
DDX55Q8NHQ9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC26.45■■□□□ 1.822e-8■■■■□ 20
DDX55Q8NHQ9 OTUB1-205ENST00000535140 638 ntTSL 323.16■■□□□ 1.39e-7■■■■□ 20
DDX55Q8NHQ9 TCIRG1-211ENST00000530449 525 ntTSL 1 (best)26.91■■□□□ 1.93e-12■■■■□ 19.9
DDX55Q8NHQ9 TCIRG1-212ENST00000530802 223 ntTSL 1 (best)22.5■■□□□ 1.193e-12■■■■□ 19.9
DDX55Q8NHQ9 TCIRG1-210ENST00000530063 220 ntTSL 1 (best)3□□□□□ -1.933e-12■■■■□ 19.9
DDX55Q8NHQ9 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.231e-8■■■■□ 19.9
DDX55Q8NHQ9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.074e-11■■■■□ 19.9
DDX55Q8NHQ9 HAUS5-206ENST00000587439 2758 ntTSL 217.56■□□□□ 0.44e-11■■■■□ 19.9
DDX55Q8NHQ9 HAUS5-208ENST00000590994 883 ntTSL 517.45■□□□□ 0.384e-11■■■■□ 19.9
DDX55Q8NHQ9 HAUS5-205ENST00000585968 2762 ntTSL 1 (best)16.28■□□□□ 0.24e-11■■■■□ 19.9
DDX55Q8NHQ9 HAUS5-202ENST00000424522 4462 ntTSL 513.13□□□□□ -0.314e-11■■■■□ 19.9
DDX55Q8NHQ9 HAUS5-201ENST00000203166 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.334e-11■■■■□ 19.9
DDX55Q8NHQ9 HAUS5-203ENST00000428854 4387 ntTSL 512.52□□□□□ -0.414e-11■■■■□ 19.9
DDX55Q8NHQ9 ADIPOR2-201ENST00000357103 4018 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.414e-11■■■■□ 19.9
DDX55Q8NHQ9 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.641e-12■■■■□ 19.9
DDX55Q8NHQ9 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.119e-7■■■■□ 19.9
DDX55Q8NHQ9 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC30.83■■■□□ 2.531e-7■■■■□ 19.8
DDX55Q8NHQ9 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.541e-6■■■■□ 19.8
DDX55Q8NHQ9 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.99■■□□□ 1.433e-8■■■■□ 19.8
DDX55Q8NHQ9 COL9A3-204ENST00000463487 760 ntTSL 523.71■■□□□ 1.393e-8■■■■□ 19.8
DDX55Q8NHQ9 SLC25A11-204ENST00000574710 2176 ntTSL 222.89■■□□□ 1.261e-6■■■■□ 19.8
DDX55Q8NHQ9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.913e-8■■■■□ 19.8
DDX55Q8NHQ9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.713e-8■■■■□ 19.8
DDX55Q8NHQ9 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.661e-7■■■■□ 19.8
DDX55Q8NHQ9 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.51e-7■■■■□ 19.8
DDX55Q8NHQ9 BANF1-203ENST00000524628 612 ntTSL 218.13■□□□□ 0.491e-7■■■■□ 19.8
DDX55Q8NHQ9 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.353e-8■■■■□ 19.8
DDX55Q8NHQ9 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.262e-7■■■■□ 19.8
DDX55Q8NHQ9 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.253e-8■■■■□ 19.8
DDX55Q8NHQ9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.45■□□□□ 0.223e-8■■■■□ 19.8
DDX55Q8NHQ9 ATP7B-212ENST00000634519 727 ntTSL 316.14■□□□□ 0.173e-8■■■■□ 19.8
DDX55Q8NHQ9 ATP7B-214ENST00000634810 5825 ntTSL 1 (best)14.95□□□□□ -0.023e-8■■■■□ 19.8
DDX55Q8NHQ9 XPO1-206ENST00000428210 6776 ntTSL 214.52□□□□□ -0.083e-8■■■■□ 19.8
DDX55Q8NHQ9 MTHFD2-202ENST00000409601 1865 ntTSL 5 BASIC14.49□□□□□ -0.091e-6■■■■□ 19.8
DDX55Q8NHQ9 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC13.76□□□□□ -0.213e-8■■■■□ 19.8
DDX55Q8NHQ9 ATP7B-203ENST00000400366 6304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.323e-8■■■■□ 19.8
DDX55Q8NHQ9 ATP7B-201ENST00000242839 6638 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.423e-8■■■■□ 19.8
DDX55Q8NHQ9 BANF1-206ENST00000528648 362 ntTSL 311.63□□□□□ -0.552e-7■■■■□ 19.8
DDX55Q8NHQ9 BANF1-207ENST00000530204 586 ntTSL 511.24□□□□□ -0.612e-7■■■■□ 19.8
DDX55Q8NHQ9 MTHFD2-201ENST00000394053 4456 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.621e-6■■■■□ 19.8
DDX55Q8NHQ9 MTHFD2-203ENST00000409804 1757 ntTSL 5 BASIC10.6□□□□□ -0.711e-6■■■■□ 19.8
DDX55Q8NHQ9 ZC3H7A-201ENST00000355758 3825 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.763e-8■■■■□ 19.8
DDX55Q8NHQ9 ATP7B-206ENST00000448424 6404 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.793e-8■■■■□ 19.8
DDX55Q8NHQ9 BANF1-204ENST00000524663 251 ntTSL 39.97□□□□□ -0.812e-7■■■■□ 19.8
DDX55Q8NHQ9 ZC3H7A-206ENST00000571405 1930 ntTSL 27.95□□□□□ -1.143e-8■■■■□ 19.8
DDX55Q8NHQ9 ZC3H7A-204ENST00000570918 1410 ntTSL 1 (best)7.53□□□□□ -1.23e-8■■■■□ 19.8
DDX55Q8NHQ9 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.97□□□□□ -1.293e-8■■■■□ 19.8
DDX55Q8NHQ9 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.663e-8■■■■□ 19.8
DDX55Q8NHQ9 XPO1-219ENST00000481073 3706 ntTSL 23.31□□□□□ -1.883e-8■■■■□ 19.8
DDX55Q8NHQ9 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.581e-6■■■■□ 19.8
DDX55Q8NHQ9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC23.26■■□□□ 1.314e-8■■■■□ 19.8
DDX55Q8NHQ9 CKS1B-206ENST00000474215 739 ntTSL 313.73□□□□□ -0.214e-8■■■■□ 19.8
DDX55Q8NHQ9 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.484e-8■■■■□ 19.8
DDX55Q8NHQ9 CKS1B-207ENST00000477676 602 ntTSL 35.81□□□□□ -1.484e-8■■■■□ 19.8
DDX55Q8NHQ9 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.8■□□□□ 0.763e-7■■■■□ 19.8
DDX55Q8NHQ9 RPL31-202ENST00000409000 641 ntTSL 2 BASIC8.18□□□□□ -1.12e-14■■■■□ 19.8
DDX55Q8NHQ9 USP10-202ENST00000540269 3070 ntTSL 1 (best)13.28□□□□□ -0.286e-7■■■■□ 19.8
DDX55Q8NHQ9 TUFM-204ENST00000569217 814 ntTSL 221.49■■□□□ 1.031e-11■■■■□ 19.8
DDX55Q8NHQ9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.711e-11■■■■□ 19.8
DDX55Q8NHQ9 YWHAH-204ENST00000443669 822 ntTSL 328.13■■■□□ 2.092e-18■■■■□ 19.7
DDX55Q8NHQ9 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.992e-18■■■■□ 19.7
DDX55Q8NHQ9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.83■■□□□ 1.882e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-208ENST00000517426 1574 ntTSL 523.48■■□□□ 1.352e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.39■□□□□ 0.542e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.292e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.212e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-214ENST00000520141 498 ntTSL 316.26■□□□□ 0.192e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-220ENST00000523344 1266 ntTSL 514.69□□□□□ -0.062e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-201ENST00000276052 3016 ntTSL 2 BASIC14.46□□□□□ -0.12e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-206ENST00000462827 664 ntTSL 514.09□□□□□ -0.152e-18■■■■□ 19.7
DDX55Q8NHQ9 YWHAH-206ENST00000479649 662 ntTSL 313.91□□□□□ -0.182e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-204ENST00000457458 3158 ntTSL 1 (best) BASIC13.73□□□□□ -0.212e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-203ENST00000428400 3016 ntTSL 212.67□□□□□ -0.382e-18■■■■□ 19.7
DDX55Q8NHQ9 CDK16-205ENST00000462483 527 ntTSL 210.01□□□□□ -0.812e-18■■■■□ 19.7
DDX55Q8NHQ9 APOL2-201ENST00000249066 2685 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.628e-17■■■■□ 19.7
DDX55Q8NHQ9 APOL2-202ENST00000358502 2551 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.868e-17■■■■□ 19.7
DDX55Q8NHQ9 WEE1-201ENST00000299613 3436 ntTSL 2 BASIC11.95□□□□□ -0.57e-7■■■■□ 19.7
DDX55Q8NHQ9 WEE1-205ENST00000527848 465 ntTSL 28.18□□□□□ -1.17e-7■■■■□ 19.7
DDX55Q8NHQ9 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC23.11■■□□□ 1.292e-11■■■■□ 19.7
DDX55Q8NHQ9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.53■■□□□ 1.042e-11■■■■□ 19.7
DDX55Q8NHQ9 RHOC-218ENST00000528831 463 ntTSL 321.39■■□□□ 1.011e-6■■■■□ 19.7
DDX55Q8NHQ9 FAM45A-205ENST00000487888 851 ntTSL 220.04■□□□□ 0.82e-11■■■■□ 19.7
DDX55Q8NHQ9 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.772e-11■■■■□ 19.7
DDX55Q8NHQ9 AL603832.3-205ENST00000606954 680 ntTSL 218.57■□□□□ 0.568e-7■■■■□ 19.7
DDX55Q8NHQ9 FAM45A-202ENST00000448258 692 ntTSL 317.7■□□□□ 0.422e-11■■■■□ 19.7
DDX55Q8NHQ9 FAM45A-209ENST00000497903 699 ntTSL 217.7■□□□□ 0.422e-11■■■■□ 19.7
DDX55Q8NHQ9 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.412e-11■■■■□ 19.7
DDX55Q8NHQ9 ESPN-209ENST00000477679 885 ntTSL 217.54■□□□□ 0.42e-11■■■■□ 19.7
DDX55Q8NHQ9 ESPN-204ENST00000434576 750 ntTSL 317.54■□□□□ 0.42e-11■■■■□ 19.7
DDX55Q8NHQ9 FAM45A-208ENST00000493766 824 ntTSL 317.53■□□□□ 0.42e-11■■■■□ 19.7
DDX55Q8NHQ9 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.29■□□□□ 0.362e-11■■■■□ 19.7
DDX55Q8NHQ9 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.19■□□□□ 0.342e-11■■■■□ 19.7
DDX55Q8NHQ9 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.12■□□□□ 0.332e-11■■■■□ 19.7
DDX55Q8NHQ9 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.89■□□□□ 0.292e-11■■■■□ 19.7
DDX55Q8NHQ9 FAM45A-204ENST00000472379 984 ntTSL 216.58■□□□□ 0.242e-11■■■■□ 19.7
Retrieved 100 of 15,504 protein–RNA pairs in 139.9 ms