Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HIST1H1AQ02539 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
HIST1H1AQ02539 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 AL161729.1-201ENST00000604104 1402 ntBASIC17.14■□□□□ 0.33
HIST1H1AQ02539 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC17.14■□□□□ 0.33
HIST1H1AQ02539 AL022069.1-201ENST00000568025 1636 ntBASIC17.14■□□□□ 0.33
HIST1H1AQ02539 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 AC019171.1-201ENST00000601251 1056 ntBASIC17.13■□□□□ 0.33
HIST1H1AQ02539 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HIST1H1AQ02539 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 GAK-223ENST00000628912 497 ntTSL 5 BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
HIST1H1AQ02539 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 CD37-213ENST00000598095 1598 ntTSL 2 BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 TSPY13P-201ENST00000338964 914 ntBASIC17.11■□□□□ 0.33
HIST1H1AQ02539 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HIST1H1AQ02539 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 AL117328.2-201ENST00000624617 1940 ntBASIC17.1■□□□□ 0.33
HIST1H1AQ02539 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 AC074183.2-201ENST00000623112 922 ntBASIC17.1■□□□□ 0.33
HIST1H1AQ02539 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIST1H1AQ02539 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 AC010980.1-201ENST00000587192 1142 ntBASIC17.09■□□□□ 0.33
HIST1H1AQ02539 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.09■□□□□ 0.33
HIST1H1AQ02539 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.08■□□□□ 0.33
HIST1H1AQ02539 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HIST1H1AQ02539 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HIST1H1AQ02539 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HIST1H1AQ02539 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms