Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.21■□□□□ 0.83
H3F3AP84243 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
H3F3AP84243 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
H3F3AP84243 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.2■□□□□ 0.82
H3F3AP84243 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
H3F3AP84243 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
H3F3AP84243 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
H3F3AP84243 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
H3F3AP84243 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.2■□□□□ 0.82
H3F3AP84243 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.2■□□□□ 0.82
H3F3AP84243 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.2■□□□□ 0.82
H3F3AP84243 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
H3F3AP84243 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
H3F3AP84243 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
H3F3AP84243 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
H3F3AP84243 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
H3F3AP84243 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.19■□□□□ 0.82
H3F3AP84243 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
H3F3AP84243 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.19■□□□□ 0.82
H3F3AP84243 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
H3F3AP84243 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.19■□□□□ 0.82
H3F3AP84243 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.19■□□□□ 0.82
H3F3AP84243 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
H3F3AP84243 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
H3F3AP84243 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
H3F3AP84243 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
H3F3AP84243 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.18■□□□□ 0.82
H3F3AP84243 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
H3F3AP84243 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
H3F3AP84243 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
H3F3AP84243 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.18■□□□□ 0.82
H3F3AP84243 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
H3F3AP84243 AL356740.2-201ENST00000601559 647 ntBASIC20.18■□□□□ 0.82
H3F3AP84243 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
H3F3AP84243 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
H3F3AP84243 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
H3F3AP84243 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
H3F3AP84243 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.18■□□□□ 0.82
H3F3AP84243 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
H3F3AP84243 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
H3F3AP84243 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
H3F3AP84243 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.17■□□□□ 0.82
H3F3AP84243 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.17■□□□□ 0.82
H3F3AP84243 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.17■□□□□ 0.82
H3F3AP84243 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.17■□□□□ 0.82
H3F3AP84243 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.17■□□□□ 0.82
H3F3AP84243 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
H3F3AP84243 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
H3F3AP84243 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.17■□□□□ 0.82
H3F3AP84243 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
H3F3AP84243 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
H3F3AP84243 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.17■□□□□ 0.82
H3F3AP84243 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
H3F3AP84243 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
H3F3AP84243 AC009102.2-201ENST00000606772 1639 ntBASIC20.16■□□□□ 0.82
H3F3AP84243 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
H3F3AP84243 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
H3F3AP84243 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
H3F3AP84243 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.16■□□□□ 0.82
H3F3AP84243 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
H3F3AP84243 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
H3F3AP84243 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.16■□□□□ 0.82
H3F3AP84243 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
H3F3AP84243 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.15■□□□□ 0.82
H3F3AP84243 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
H3F3AP84243 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
H3F3AP84243 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
H3F3AP84243 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.15■□□□□ 0.82
H3F3AP84243 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
H3F3AP84243 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
H3F3AP84243 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.15■□□□□ 0.82
H3F3AP84243 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
H3F3AP84243 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
H3F3AP84243 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
H3F3AP84243 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
H3F3AP84243 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
H3F3AP84243 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
H3F3AP84243 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
H3F3AP84243 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.14■□□□□ 0.81
H3F3AP84243 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
H3F3AP84243 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
H3F3AP84243 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.14■□□□□ 0.81
H3F3AP84243 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.14■□□□□ 0.81
H3F3AP84243 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
H3F3AP84243 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
H3F3AP84243 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
H3F3AP84243 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.14■□□□□ 0.81
H3F3AP84243 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
H3F3AP84243 AC092068.2-201ENST00000590491 1708 ntBASIC20.13■□□□□ 0.81
H3F3AP84243 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
H3F3AP84243 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.13■□□□□ 0.81
H3F3AP84243 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.13■□□□□ 0.81
H3F3AP84243 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
H3F3AP84243 ANOS2P-203ENST00000472227 1816 ntBASIC20.13■□□□□ 0.81
H3F3AP84243 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
H3F3AP84243 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.13■□□□□ 0.81
H3F3AP84243 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.12■□□□□ 0.81
H3F3AP84243 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
H3F3AP84243 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
H3F3AP84243 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms