Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CX3CR1P49238 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CX3CR1P49238 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.79■□□□□ 0.76
CX3CR1P49238 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CX3CR1P49238 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CX3CR1P49238 AC004448.1-201ENST00000458332 883 ntBASIC19.79■□□□□ 0.76
CX3CR1P49238 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CX3CR1P49238 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CX3CR1P49238 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CX3CR1P49238 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CX3CR1P49238 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.78■□□□□ 0.76
CX3CR1P49238 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.78■□□□□ 0.76
CX3CR1P49238 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CX3CR1P49238 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CX3CR1P49238 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CX3CR1P49238 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CX3CR1P49238 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CX3CR1P49238 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.77■□□□□ 0.76
CX3CR1P49238 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.77■□□□□ 0.76
CX3CR1P49238 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
CX3CR1P49238 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CX3CR1P49238 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CX3CR1P49238 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
CX3CR1P49238 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
CX3CR1P49238 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.76■□□□□ 0.75
CX3CR1P49238 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.76■□□□□ 0.75
CX3CR1P49238 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.76■□□□□ 0.75
CX3CR1P49238 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.76■□□□□ 0.75
CX3CR1P49238 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CX3CR1P49238 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
CX3CR1P49238 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.75■□□□□ 0.75
CX3CR1P49238 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.75■□□□□ 0.75
CX3CR1P49238 AL031848.2-201ENST00000607670 837 ntBASIC19.75■□□□□ 0.75
CX3CR1P49238 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.75■□□□□ 0.75
CX3CR1P49238 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.75■□□□□ 0.75
CX3CR1P49238 DUSP8P3-201ENST00000399571 1760 ntBASIC19.75■□□□□ 0.75
CX3CR1P49238 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CX3CR1P49238 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.74■□□□□ 0.75
CX3CR1P49238 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.74■□□□□ 0.75
CX3CR1P49238 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CX3CR1P49238 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC19.74■□□□□ 0.75
CX3CR1P49238 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.74■□□□□ 0.75
CX3CR1P49238 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CX3CR1P49238 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.74■□□□□ 0.75
CX3CR1P49238 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
CX3CR1P49238 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CX3CR1P49238 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CX3CR1P49238 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CX3CR1P49238 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CX3CR1P49238 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.73■□□□□ 0.75
CX3CR1P49238 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.73■□□□□ 0.75
CX3CR1P49238 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CX3CR1P49238 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CX3CR1P49238 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CX3CR1P49238 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CX3CR1P49238 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.73■□□□□ 0.75
CX3CR1P49238 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CX3CR1P49238 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.72■□□□□ 0.75
CX3CR1P49238 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CX3CR1P49238 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CX3CR1P49238 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CX3CR1P49238 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CX3CR1P49238 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.72■□□□□ 0.75
CX3CR1P49238 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
CX3CR1P49238 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CX3CR1P49238 CLDN5-201ENST00000403084 2357 ntBASIC19.72■□□□□ 0.75
CX3CR1P49238 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.72■□□□□ 0.75
CX3CR1P49238 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CX3CR1P49238 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms