Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.2■□□□□ 0.98
CLPTM1O96005 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLPTM1O96005 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLPTM1O96005 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.2■□□□□ 0.98
CLPTM1O96005 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLPTM1O96005 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.19■□□□□ 0.98
CLPTM1O96005 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.19■□□□□ 0.98
CLPTM1O96005 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.19■□□□□ 0.98
CLPTM1O96005 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CLPTM1O96005 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLPTM1O96005 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLPTM1O96005 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLPTM1O96005 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLPTM1O96005 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.18■□□□□ 0.98
CLPTM1O96005 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.18■□□□□ 0.98
CLPTM1O96005 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.18■□□□□ 0.98
CLPTM1O96005 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLPTM1O96005 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.18■□□□□ 0.98
CLPTM1O96005 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CLPTM1O96005 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLPTM1O96005 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
CLPTM1O96005 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLPTM1O96005 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLPTM1O96005 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.17■□□□□ 0.98
CLPTM1O96005 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLPTM1O96005 ECEL1P2-201ENST00000461596 1295 ntBASIC21.17■□□□□ 0.98
CLPTM1O96005 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.17■□□□□ 0.98
CLPTM1O96005 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLPTM1O96005 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CLPTM1O96005 HLA-L-211ENST00000482052 1765 ntBASIC21.17■□□□□ 0.98
CLPTM1O96005 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLPTM1O96005 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLPTM1O96005 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CLPTM1O96005 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.16■□□□□ 0.98
CLPTM1O96005 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.16■□□□□ 0.98
CLPTM1O96005 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLPTM1O96005 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLPTM1O96005 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLPTM1O96005 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLPTM1O96005 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLPTM1O96005 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLPTM1O96005 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLPTM1O96005 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLPTM1O96005 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.15■□□□□ 0.98
CLPTM1O96005 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLPTM1O96005 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLPTM1O96005 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CLPTM1O96005 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLPTM1O96005 AC242852.2-201ENST00000615738 1807 ntBASIC21.15■□□□□ 0.98
CLPTM1O96005 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CLPTM1O96005 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLPTM1O96005 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLPTM1O96005 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLPTM1O96005 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLPTM1O96005 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLPTM1O96005 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLPTM1O96005 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLPTM1O96005 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLPTM1O96005 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.14■□□□□ 0.97
CLPTM1O96005 AC073130.3-201ENST00000624389 2278 ntBASIC21.14■□□□□ 0.97
CLPTM1O96005 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLPTM1O96005 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLPTM1O96005 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.14■□□□□ 0.97
CLPTM1O96005 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLPTM1O96005 AC092068.2-201ENST00000590491 1708 ntBASIC21.13■□□□□ 0.97
CLPTM1O96005 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLPTM1O96005 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CLPTM1O96005 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.13■□□□□ 0.97
CLPTM1O96005 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLPTM1O96005 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLPTM1O96005 AL359504.2-201ENST00000605506 1601 ntBASIC21.13■□□□□ 0.97
CLPTM1O96005 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CLPTM1O96005 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLPTM1O96005 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CLPTM1O96005 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLPTM1O96005 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CLPTM1O96005 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CLPTM1O96005 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLPTM1O96005 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLPTM1O96005 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.12■□□□□ 0.97
CLPTM1O96005 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLPTM1O96005 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CLPTM1O96005 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLPTM1O96005 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
CLPTM1O96005 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLPTM1O96005 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CLPTM1O96005 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CLPTM1O96005 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLPTM1O96005 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.11■□□□□ 0.97
CLPTM1O96005 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLPTM1O96005 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms