Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.73■■□□□ 1.07
SLC28A1O00337 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.73■■□□□ 1.07
SLC28A1O00337 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SLC28A1O00337 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.73■■□□□ 1.07
SLC28A1O00337 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.73■■□□□ 1.07
SLC28A1O00337 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.73■■□□□ 1.07
SLC28A1O00337 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SLC28A1O00337 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
SLC28A1O00337 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
SLC28A1O00337 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 AC012354.3-201ENST00000623734 483 ntBASIC21.72■■□□□ 1.07
SLC28A1O00337 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.72■■□□□ 1.07
SLC28A1O00337 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.72■■□□□ 1.07
SLC28A1O00337 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SLC28A1O00337 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SLC28A1O00337 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
SLC28A1O00337 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC28A1O00337 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC28A1O00337 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC28A1O00337 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC28A1O00337 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC28A1O00337 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SLC28A1O00337 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
SLC28A1O00337 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.71■■□□□ 1.07
SLC28A1O00337 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
SLC28A1O00337 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.71■■□□□ 1.07
SLC28A1O00337 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.71■■□□□ 1.07
SLC28A1O00337 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SLC28A1O00337 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC28A1O00337 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.71■■□□□ 1.07
SLC28A1O00337 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.7■■□□□ 1.07
SLC28A1O00337 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.7■■□□□ 1.07
SLC28A1O00337 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SLC28A1O00337 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC28A1O00337 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC28A1O00337 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
SLC28A1O00337 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
SLC28A1O00337 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC28A1O00337 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC28A1O00337 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC28A1O00337 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SLC28A1O00337 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC28A1O00337 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.69■■□□□ 1.06
SLC28A1O00337 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SLC28A1O00337 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC28A1O00337 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC28A1O00337 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC28A1O00337 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
SLC28A1O00337 AC233723.2-201ENST00000623798 2106 ntBASIC21.69■■□□□ 1.06
SLC28A1O00337 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SLC28A1O00337 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.69■■□□□ 1.06
SLC28A1O00337 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.69■■□□□ 1.06
SLC28A1O00337 AL117328.2-201ENST00000624617 1940 ntBASIC21.68■■□□□ 1.06
SLC28A1O00337 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC28A1O00337 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC28A1O00337 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC28A1O00337 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.68■■□□□ 1.06
SLC28A1O00337 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.68■■□□□ 1.06
SLC28A1O00337 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.68■■□□□ 1.06
SLC28A1O00337 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC28A1O00337 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.68■■□□□ 1.06
SLC28A1O00337 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC28A1O00337 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SLC28A1O00337 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC28A1O00337 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC28A1O00337 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.67■■□□□ 1.06
SLC28A1O00337 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.67■■□□□ 1.06
SLC28A1O00337 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC28A1O00337 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SLC28A1O00337 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC28A1O00337 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SLC28A1O00337 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC28A1O00337 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SLC28A1O00337 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC28A1O00337 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.67■■□□□ 1.06
SLC28A1O00337 AC079630.1-202ENST00000618127 1840 ntBASIC21.66■■□□□ 1.06
SLC28A1O00337 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
SLC28A1O00337 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.66■■□□□ 1.06
SLC28A1O00337 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC28A1O00337 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC28A1O00337 C1orf229-201ENST00000623686 2258 ntBASIC21.66■■□□□ 1.06
SLC28A1O00337 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC28A1O00337 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.66■■□□□ 1.06
SLC28A1O00337 AL033527.3-201ENST00000566366 1196 ntBASIC21.66■■□□□ 1.06
SLC28A1O00337 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.66■■□□□ 1.06
SLC28A1O00337 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
SLC28A1O00337 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SLC28A1O00337 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SLC28A1O00337 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.66■■□□□ 1.06
SLC28A1O00337 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SLC28A1O00337 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.66■■□□□ 1.06
SLC28A1O00337 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms