Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
CHKB-CPT1BH3BT56 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC12.71□□□□□ -0.37
CHKB-CPT1BH3BT56 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC12.71□□□□□ -0.37
CHKB-CPT1BH3BT56 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC12.71□□□□□ -0.37
CHKB-CPT1BH3BT56 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CHKB-CPT1BH3BT56 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
CHKB-CPT1BH3BT56 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.38
CHKB-CPT1BH3BT56 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CHKB-CPT1BH3BT56 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC12.71□□□□□ -0.38
CHKB-CPT1BH3BT56 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHKB-CPT1BH3BT56 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 PALM-208ENST00000592155 2272 ntTSL 4 BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHKB-CPT1BH3BT56 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 ME2-208ENST00000638937 2471 ntTSL 5 BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 AP002414.2-202ENST00000590929 1450 ntBASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 WHAMMP3-201ENST00000611636 1609 ntBASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC12.68□□□□□ -0.38
CHKB-CPT1BH3BT56 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHKB-CPT1BH3BT56 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHKB-CPT1BH3BT56 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHKB-CPT1BH3BT56 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms