Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC112694.1-202ENST00000540985 943 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 KRT127P-201ENST00000547183 433 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 AC104506.1-201ENST00000609247 429 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 MIR6819-201ENST00000622122 61 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 AC009517.1-201ENST00000454750 570 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 AC026120.2-201ENST00000617239 309 ntBASIC13.7□□□□□ -0.22
VPS13AQ96RL7 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
VPS13AQ96RL7 AC111170.3-201ENST00000624282 2464 ntBASIC13.69□□□□□ -0.22
VPS13AQ96RL7 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 OR52X1P-201ENST00000446117 914 ntBASIC13.69□□□□□ -0.22
VPS13AQ96RL7 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 DUX4L31-201ENST00000446466 1136 ntBASIC13.69□□□□□ -0.22
VPS13AQ96RL7 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 AC113398.1-201ENST00000464124 406 ntBASIC13.69□□□□□ -0.22
VPS13AQ96RL7 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 PHBP18-201ENST00000546648 813 ntBASIC13.69□□□□□ -0.22
VPS13AQ96RL7 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 CDIPT-AS1-203ENST00000638164 713 ntBASIC13.69□□□□□ -0.22
VPS13AQ96RL7 AC005906.2-208ENST00000638655 1286 ntTSL 5 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
VPS13AQ96RL7 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AC010086.2-201ENST00000428616 226 ntBASIC13.68□□□□□ -0.22
VPS13AQ96RL7 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 RPL29P2-201ENST00000488409 460 ntBASIC13.68□□□□□ -0.22
VPS13AQ96RL7 CD44-224ENST00000526669 870 ntTSL 5 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AL022313.4-201ENST00000562756 2046 ntBASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 MRPL23-203ENST00000397294 551 ntTSL 4 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 RN7SL76P-201ENST00000482435 289 ntBASIC13.68□□□□□ -0.22
VPS13AQ96RL7 MIR5091-201ENST00000578707 93 ntBASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AC010335.3-201ENST00000623767 531 ntBASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS13AQ96RL7 AC018442.1-201ENST00000421439 2061 ntBASIC13.68□□□□□ -0.22
VPS13AQ96RL7 PES1P2-201ENST00000449745 1735 ntBASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms