Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC13.29□□□□□ -0.28
RNF4P78317 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 ELK2AP-201ENST00000392510 1007 ntBASIC13.29□□□□□ -0.28
RNF4P78317 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.29□□□□□ -0.28
RNF4P78317 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.29□□□□□ -0.28
RNF4P78317 AC093752.3-201ENST00000567343 901 ntBASIC13.29□□□□□ -0.28
RNF4P78317 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 RN7SL574P-201ENST00000581512 297 ntBASIC13.29□□□□□ -0.28
RNF4P78317 AC020922.3-201ENST00000595064 547 ntBASIC13.29□□□□□ -0.28
RNF4P78317 AC097724.1-201ENST00000609581 426 ntBASIC13.29□□□□□ -0.28
RNF4P78317 MEG3_2.1-201ENST00000611456 105 ntBASIC13.29□□□□□ -0.28
RNF4P78317 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
RNF4P78317 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
RNF4P78317 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.29□□□□□ -0.28
RNF4P78317 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.29□□□□□ -0.28
RNF4P78317 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
RNF4P78317 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 AC152010.1-201ENST00000415779 2006 ntBASIC13.29□□□□□ -0.28
RNF4P78317 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RNF4P78317 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
RNF4P78317 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
RNF4P78317 MBP-201ENST00000354542 575 ntTSL 2 BASIC13.28□□□□□ -0.28
RNF4P78317 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
RNF4P78317 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 USP17L6P-201ENST00000382470 1197 ntBASIC13.28□□□□□ -0.28
RNF4P78317 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 DUX4L50-201ENST00000455245 715 ntBASIC13.28□□□□□ -0.28
RNF4P78317 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.28□□□□□ -0.28
RNF4P78317 CHMP4BP1-201ENST00000556017 588 ntBASIC13.28□□□□□ -0.28
RNF4P78317 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.28□□□□□ -0.28
RNF4P78317 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 AL353770.1-201ENST00000614915 403 ntBASIC13.28□□□□□ -0.28
RNF4P78317 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 TUBB8P4-201ENST00000511806 1324 ntBASIC13.28□□□□□ -0.28
RNF4P78317 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.28□□□□□ -0.28
RNF4P78317 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.28□□□□□ -0.28
RNF4P78317 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.28□□□□□ -0.28
RNF4P78317 AC005252.3-201ENST00000623855 2258 ntBASIC13.28□□□□□ -0.28
RNF4P78317 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
RNF4P78317 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
RNF4P78317 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms