Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 MIR1247-201ENST00000408206 136 ntBASIC14.86□□□□□ -0.03
PTPN9P43378 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.86□□□□□ -0.03
PTPN9P43378 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.86□□□□□ -0.03
PTPN9P43378 AC244107.1-201ENST00000442033 332 ntBASIC14.86□□□□□ -0.03
PTPN9P43378 BX284668.4-201ENST00000453917 508 ntBASIC14.86□□□□□ -0.03
PTPN9P43378 KRT8P13-201ENST00000463294 1010 ntBASIC14.86□□□□□ -0.03
PTPN9P43378 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.86□□□□□ -0.03
PTPN9P43378 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC14.86□□□□□ -0.03
PTPN9P43378 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.86□□□□□ -0.03
PTPN9P43378 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC14.86□□□□□ -0.03
PTPN9P43378 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.86□□□□□ -0.03
PTPN9P43378 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 AC138028.6-201ENST00000616106 1482 ntBASIC14.86□□□□□ -0.03
PTPN9P43378 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.86□□□□□ -0.03
PTPN9P43378 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.86□□□□□ -0.03
PTPN9P43378 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PTPN9P43378 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN9P43378 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.85□□□□□ -0.03
PTPN9P43378 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PTPN9P43378 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
PTPN9P43378 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 SDCCAG3P2-201ENST00000326105 1023 ntBASIC14.85□□□□□ -0.03
PTPN9P43378 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN9P43378 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN9P43378 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 RPS9P1-201ENST00000419943 583 ntBASIC14.85□□□□□ -0.03
PTPN9P43378 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.85□□□□□ -0.03
PTPN9P43378 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN9P43378 SCARNA20.5-201ENST00000516991 142 ntBASIC14.85□□□□□ -0.03
PTPN9P43378 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.85□□□□□ -0.03
PTPN9P43378 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC14.85□□□□□ -0.03
PTPN9P43378 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC14.85□□□□□ -0.03
PTPN9P43378 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
PTPN9P43378 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PTPN9P43378 AC244452.3-201ENST00000636814 210 ntBASIC14.85□□□□□ -0.03
PTPN9P43378 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN9P43378 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.85□□□□□ -0.03
PTPN9P43378 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN9P43378 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 TUBB4AP1-201ENST00000450755 1325 ntBASIC14.85□□□□□ -0.03
PTPN9P43378 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN9P43378 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
PTPN9P43378 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN9P43378 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.84□□□□□ -0.03
PTPN9P43378 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PTPN9P43378 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN9P43378 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms