Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
SMARCA1P28370 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 SAT1-201ENST00000379251 801 ntTSL 2 BASIC16.3■□□□□ 0.2
SMARCA1P28370 SAT1-202ENST00000379253 909 ntTSL 2 BASIC16.3■□□□□ 0.2
SMARCA1P28370 SAT1-203ENST00000379254 868 ntTSL 3 BASIC16.3■□□□□ 0.2
SMARCA1P28370 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 RN7SL788P-201ENST00000460504 316 ntBASIC16.3■□□□□ 0.2
SMARCA1P28370 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC16.3■□□□□ 0.2
SMARCA1P28370 RN7SL81P-201ENST00000493781 261 ntBASIC16.3■□□□□ 0.2
SMARCA1P28370 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC16.3■□□□□ 0.2
SMARCA1P28370 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC16.3■□□□□ 0.2
SMARCA1P28370 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC16.3■□□□□ 0.2
SMARCA1P28370 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC16.3■□□□□ 0.2
SMARCA1P28370 AC005632.3-201ENST00000605544 308 ntBASIC16.3■□□□□ 0.2
SMARCA1P28370 TP53-221ENST00000615910 1149 ntTSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 AL928921.2-201ENST00000641325 2442 ntBASIC16.3■□□□□ 0.2
SMARCA1P28370 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.3■□□□□ 0.2
SMARCA1P28370 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 AC011474.4-201ENST00000623523 2076 ntBASIC16.3■□□□□ 0.2
SMARCA1P28370 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC16.3■□□□□ 0.2
SMARCA1P28370 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMARCA1P28370 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.29■□□□□ 0.2
SMARCA1P28370 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.29■□□□□ 0.2
SMARCA1P28370 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.29■□□□□ 0.2
SMARCA1P28370 AL512306.1-201ENST00000432698 848 ntBASIC16.29■□□□□ 0.2
SMARCA1P28370 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC16.29■□□□□ 0.2
SMARCA1P28370 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC16.29■□□□□ 0.2
SMARCA1P28370 CHCHD2P9-201ENST00000461726 456 ntBASIC16.29■□□□□ 0.2
SMARCA1P28370 RNA5SP423-201ENST00000517127 109 ntBASIC16.29■□□□□ 0.2
SMARCA1P28370 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.29■□□□□ 0.2
SMARCA1P28370 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 POLD4-208ENST00000532830 904 ntTSL 3 BASIC16.29■□□□□ 0.2
SMARCA1P28370 KLF17P1-201ENST00000547105 1126 ntBASIC16.29■□□□□ 0.2
SMARCA1P28370 AP001184.1-201ENST00000637936 376 ntBASIC16.29■□□□□ 0.2
SMARCA1P28370 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC16.29■□□□□ 0.2
SMARCA1P28370 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SMARCA1P28370 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SMARCA1P28370 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SMARCA1P28370 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.29■□□□□ 0.2
SMARCA1P28370 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SMARCA1P28370 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.29■□□□□ 0.2
SMARCA1P28370 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMARCA1P28370 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.28■□□□□ 0.2
SMARCA1P28370 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 KRT8P18-201ENST00000413425 1445 ntBASIC16.28■□□□□ 0.2
SMARCA1P28370 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC16.28■□□□□ 0.2
SMARCA1P28370 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.28■□□□□ 0.2
SMARCA1P28370 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.28■□□□□ 0.2
SMARCA1P28370 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC16.28■□□□□ 0.2
SMARCA1P28370 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMARCA1P28370 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms