Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC16.9■□□□□ 0.3
HMGB1P09429 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
HMGB1P09429 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
HMGB1P09429 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC16.9■□□□□ 0.3
HMGB1P09429 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HMGB1P09429 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
HMGB1P09429 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HMGB1P09429 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC16.89■□□□□ 0.3
HMGB1P09429 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
HMGB1P09429 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC16.89■□□□□ 0.3
HMGB1P09429 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 LINC02486-201ENST00000604157 3000 ntBASIC16.89■□□□□ 0.29
HMGB1P09429 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 LINC01815-202ENST00000641468 1409 ntBASIC16.89■□□□□ 0.29
HMGB1P09429 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGB1P09429 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGB1P09429 AC061965.1-201ENST00000560524 1465 ntBASIC16.89■□□□□ 0.29
HMGB1P09429 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
HMGB1P09429 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.89■□□□□ 0.29
HMGB1P09429 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB1P09429 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGB1P09429 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGB1P09429 PFN1P12-201ENST00000455938 534 ntBASIC16.89■□□□□ 0.29
HMGB1P09429 MARK2P5-201ENST00000507649 634 ntBASIC16.89■□□□□ 0.29
HMGB1P09429 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB1P09429 MAX-218ENST00000557746 571 ntTSL 4 BASIC16.89■□□□□ 0.29
HMGB1P09429 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.89■□□□□ 0.29
HMGB1P09429 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB1P09429 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB1P09429 CR392039.2-201ENST00000623182 509 ntBASIC16.89■□□□□ 0.29
HMGB1P09429 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGB1P09429 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGB1P09429 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
HMGB1P09429 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
HMGB1P09429 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGB1P09429 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.89■□□□□ 0.29
HMGB1P09429 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HMGB1P09429 AC072061.1-201ENST00000569710 2234 ntBASIC16.89■□□□□ 0.29
HMGB1P09429 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
HMGB1P09429 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 STK26-204ENST00000481105 1835 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGB1P09429 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGB1P09429 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGB1P09429 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
HMGB1P09429 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 POM121L4P-202ENST00000427789 1891 ntBASIC16.88■□□□□ 0.29
HMGB1P09429 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HMGB1P09429 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB1P09429 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 RCC2P1-201ENST00000452257 1476 ntBASIC16.88■□□□□ 0.29
HMGB1P09429 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB1P09429 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
HMGB1P09429 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB1P09429 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.88■□□□□ 0.29
HMGB1P09429 BRWD1P1-201ENST00000401091 371 ntBASIC16.88■□□□□ 0.29
HMGB1P09429 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB1P09429 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.88■□□□□ 0.29
HMGB1P09429 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC16.88■□□□□ 0.29
HMGB1P09429 GOLGA2P8-201ENST00000505201 779 ntBASIC16.88■□□□□ 0.29
HMGB1P09429 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB1P09429 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGB1P09429 MIR3188-201ENST00000583494 85 ntBASIC16.88■□□□□ 0.29
HMGB1P09429 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGB1P09429 AL008638.5-201ENST00000623814 1298 ntBASIC16.88■□□□□ 0.29
HMGB1P09429 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGB1P09429 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms