Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC12.29□□□□□ -0.44
SDCBPO00560 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC12.29□□□□□ -0.44
SDCBPO00560 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
SDCBPO00560 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SDCBPO00560 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
SDCBPO00560 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
SDCBPO00560 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 STK25-235ENST00000543554 2556 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 KHSRPP1-201ENST00000427983 1768 ntBASIC12.28□□□□□ -0.44
SDCBPO00560 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC12.28□□□□□ -0.44
SDCBPO00560 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 HMGN1P19-201ENST00000436976 333 ntBASIC12.28□□□□□ -0.44
SDCBPO00560 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC12.28□□□□□ -0.44
SDCBPO00560 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 GCOM2-201ENST00000509133 1104 ntBASIC12.28□□□□□ -0.44
SDCBPO00560 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC12.28□□□□□ -0.44
SDCBPO00560 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC12.28□□□□□ -0.44
SDCBPO00560 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.28□□□□□ -0.44
SDCBPO00560 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
SDCBPO00560 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
SDCBPO00560 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SDCBPO00560 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC12.27□□□□□ -0.44
SDCBPO00560 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
SDCBPO00560 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SDCBPO00560 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.44
SDCBPO00560 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SDCBPO00560 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
SDCBPO00560 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC12.27□□□□□ -0.44
SDCBPO00560 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC12.27□□□□□ -0.44
SDCBPO00560 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
SDCBPO00560 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SDCBPO00560 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC12.27□□□□□ -0.44
SDCBPO00560 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
SDCBPO00560 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 TPM3P8-201ENST00000330554 643 ntBASIC12.27□□□□□ -0.45
SDCBPO00560 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
SDCBPO00560 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC12.27□□□□□ -0.45
SDCBPO00560 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC12.27□□□□□ -0.45
SDCBPO00560 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC12.27□□□□□ -0.45
SDCBPO00560 RPL28-203ENST00000428193 573 ntTSL 2 BASIC12.27□□□□□ -0.45
SDCBPO00560 RPL28-204ENST00000431533 590 ntTSL 2 BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms