Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.77□□□□□ -0.04
NPAS3Q8IXF0 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 ACTG1P19-201ENST00000418987 1116 ntBASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 AC108734.2-201ENST00000420887 1069 ntBASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 IDS-203ENST00000428056 1213 ntTSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 AC093826.1-201ENST00000508655 993 ntBASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 KLF17P1-201ENST00000547105 1126 ntBASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 KRT8P2-201ENST00000556193 944 ntBASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 AC013391.2-201ENST00000559041 501 ntTSL 5 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 AC145285.5-201ENST00000562217 361 ntBASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 GAS7-216ENST00000583882 553 ntTSL 5 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 AL118522.1-201ENST00000611368 560 ntBASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 AC005786.4-201ENST00000623369 682 ntBASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 HELLS-212ENST00000630929 400 ntTSL 5 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.77□□□□□ -0.05
NPAS3Q8IXF0 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 LINC00115-201ENST00000473798 1317 ntBASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 HCG27-204ENST00000424675 895 ntTSL 3 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 IGHV1-12-201ENST00000518307 205 ntBASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 AC012073.1-201ENST00000606114 1108 ntBASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NPAS3Q8IXF0 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NPAS3Q8IXF0 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms