Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
RPL39P62891 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
RPL39P62891 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
RPL39P62891 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC10.21□□□□□ -0.78
RPL39P62891 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
RPL39P62891 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.78
RPL39P62891 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
RPL39P62891 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
RPL39P62891 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
RPL39P62891 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC10.2□□□□□ -0.78
RPL39P62891 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
RPL39P62891 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 USP17L6P-201ENST00000382470 1197 ntBASIC10.2□□□□□ -0.78
RPL39P62891 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
RPL39P62891 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 B9D1-203ENST00000395615 805 ntTSL 3 BASIC10.2□□□□□ -0.78
RPL39P62891 AL391647.1-201ENST00000395664 511 ntBASIC10.2□□□□□ -0.78
RPL39P62891 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 AL022342.1-201ENST00000400363 863 ntBASIC10.2□□□□□ -0.78
RPL39P62891 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC10.2□□□□□ -0.78
RPL39P62891 F10-203ENST00000409306 1450 ntTSL 3 BASIC10.2□□□□□ -0.78
RPL39P62891 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC10.2□□□□□ -0.78
RPL39P62891 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 AC107890.1-201ENST00000422478 521 ntBASIC10.2□□□□□ -0.78
RPL39P62891 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC10.2□□□□□ -0.78
RPL39P62891 CNN2P11-201ENST00000429351 262 ntBASIC10.2□□□□□ -0.78
RPL39P62891 MKRN5P-201ENST00000445263 1467 ntBASIC10.2□□□□□ -0.78
RPL39P62891 BTBD7P1-201ENST00000447253 1453 ntBASIC10.2□□□□□ -0.78
RPL39P62891 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 AC112482.1-201ENST00000492080 688 ntBASIC10.2□□□□□ -0.78
RPL39P62891 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC10.2□□□□□ -0.78
RPL39P62891 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC10.2□□□□□ -0.78
RPL39P62891 AC135586.1-201ENST00000539323 574 ntBASIC10.2□□□□□ -0.78
RPL39P62891 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC10.2□□□□□ -0.78
RPL39P62891 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 AC120045.2-201ENST00000567334 178 ntBASIC10.2□□□□□ -0.78
RPL39P62891 ARL16-202ENST00000570561 768 ntTSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
RPL39P62891 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
RPL39P62891 AL590560.3-201ENST00000623350 461 ntBASIC10.2□□□□□ -0.78
RPL39P62891 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC10.2□□□□□ -0.78
RPL39P62891 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
RPL39P62891 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC10.2□□□□□ -0.78
RPL39P62891 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
RPL39P62891 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
RPL39P62891 CICP1-201ENST00000416803 2410 ntBASIC10.19□□□□□ -0.78
RPL39P62891 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
RPL39P62891 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC10.19□□□□□ -0.78
RPL39P62891 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC10.19□□□□□ -0.78
RPL39P62891 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
RPL39P62891 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
RPL39P62891 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
RPL39P62891 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
RPL39P62891 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC10.19□□□□□ -0.78
RPL39P62891 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC10.19□□□□□ -0.78
RPL39P62891 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms