Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC10.62□□□□□ -0.71
CKS2P33552 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC10.62□□□□□ -0.71
CKS2P33552 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 MAST4-202ENST00000403625 10711 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
CKS2P33552 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC10.62□□□□□ -0.71
CKS2P33552 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC10.62□□□□□ -0.71
CKS2P33552 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC10.62□□□□□ -0.71
CKS2P33552 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC10.62□□□□□ -0.71
CKS2P33552 DNM3-208ENST00000627582 7625 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC10.62□□□□□ -0.71
CKS2P33552 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC10.62□□□□□ -0.71
CKS2P33552 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 CICP1-201ENST00000416803 2410 ntBASIC10.62□□□□□ -0.71
CKS2P33552 ROBO2-209ENST00000487694 5919 ntTSL 5 BASIC10.62□□□□□ -0.71
CKS2P33552 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
CKS2P33552 PDXK-201ENST00000291565 7366 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 AC003102.2-201ENST00000589195 1469 ntBASIC10.61□□□□□ -0.71
CKS2P33552 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 SLC6A1-201ENST00000287766 4502 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 PAX2-203ENST00000370296 4140 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 PAX2-205ENST00000428433 4126 ntTSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC10.61□□□□□ -0.71
CKS2P33552 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 PLEC-202ENST00000345136 14803 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 AL355102.3-201ENST00000554299 1678 ntBASIC10.61□□□□□ -0.71
CKS2P33552 GRAMD4P3-201ENST00000621665 1669 ntBASIC10.61□□□□□ -0.71
CKS2P33552 AL645937.6-201ENST00000641122 3727 ntBASIC10.61□□□□□ -0.71
CKS2P33552 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC10.61□□□□□ -0.71
CKS2P33552 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
CKS2P33552 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC10.61□□□□□ -0.71
CKS2P33552 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 KRT18P56-201ENST00000507275 550 ntBASIC10.61□□□□□ -0.71
CKS2P33552 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC10.61□□□□□ -0.71
CKS2P33552 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 AC022616.1-201ENST00000518688 554 ntBASIC10.61□□□□□ -0.71
CKS2P33552 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC10.61□□□□□ -0.71
CKS2P33552 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC10.61□□□□□ -0.71
CKS2P33552 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC10.61□□□□□ -0.71
CKS2P33552 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC10.61□□□□□ -0.71
CKS2P33552 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC10.61□□□□□ -0.71
CKS2P33552 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC10.61□□□□□ -0.71
CKS2P33552 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC10.61□□□□□ -0.71
CKS2P33552 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 MIR6080-201ENST00000617359 66 ntBASIC10.61□□□□□ -0.71
CKS2P33552 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 ESR2-213ENST00000557772 5458 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 NAV1-203ENST00000367302 9685 ntTSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
CKS2P33552 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 AL928654.5-201ENST00000624831 2501 ntBASIC10.61□□□□□ -0.71
CKS2P33552 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 COL4A6-209ENST00000545689 6380 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC10.61□□□□□ -0.71
CKS2P33552 SYMPK-201ENST00000245934 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
CKS2P33552 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC10.61□□□□□ -0.71
CKS2P33552 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
CKS2P33552 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CKS2P33552 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
CKS2P33552 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC10.6□□□□□ -0.71
CKS2P33552 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms