RNA–Protein interactions for RNA: ENST00000287766.8

SLC6A1-201, Transcript of solute carrier family 6 member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC6A1, Length 4,502 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1-201ENST00000287766 NISCHQ9Y2I1 1504 aa22.89■■□□□ 1.25
SLC6A1-201ENST00000287766 DCAF8L2P0C7V8 631 aa21.86■■□□□ 1.09
SLC6A1-201ENST00000287766 SUPT5HO00267 1087 aaKnown RBP21.48■■□□□ 1.03
SLC6A1-201ENST00000287766 SHROOM4Q9ULL8 1493 aa21.47■■□□□ 1.03
SLC6A1-201ENST00000287766 EHMT2Q96KQ7 1210 aa20.5■□□□□ 0.87
SLC6A1-201ENST00000287766 PCGF6Q9BYE7 350 aa20.26■□□□□ 0.83
SLC6A1-201ENST00000287766 FAM9AQ8IZU1 332 aaPredicted RBP20.14■□□□□ 0.81
SLC6A1-201ENST00000287766 CHIC1Q5VXU3 224 aa19.83■□□□□ 0.77
SLC6A1-201ENST00000287766 TTBK1Q5TCY1 1321 aaPredicted RBP19.79■□□□□ 0.76
SLC6A1-201ENST00000287766 LOC105371045A0A1W2PR82 267 aa19.77■□□□□ 0.76
SLC6A1-201ENST00000287766 TRIM41Q8WV44 630 aa19.73■□□□□ 0.75
SLC6A1-201ENST00000287766 PELP1Q8IZL8 1130 aaKnown RBP19.71■□□□□ 0.75
SLC6A1-201ENST00000287766 PPARGC1BQ86YN6 1023 aaKnown RBP19.59■□□□□ 0.73
SLC6A1-201ENST00000287766 HRCP23327 699 aa19.57■□□□□ 0.72
SLC6A1-201ENST00000287766 RANGAP1P46060 587 aaPredicted RBP19.38■□□□□ 0.69
SLC6A1-201ENST00000287766 MYT1Q01538 1121 aa19.36■□□□□ 0.69
SLC6A1-201ENST00000287766 TRIM26Q12899 539 aaPredicted RBP19.34■□□□□ 0.69
SLC6A1-201ENST00000287766 CENPBP07199 599 aaPredicted RBP19.3■□□□□ 0.68
SLC6A1-201ENST00000287766 CCER1Q8TC90 406 aaPredicted RBP19.29■□□□□ 0.68
SLC6A1-201ENST00000287766 ZEB1P37275 1124 aaPredicted RBP19.19■□□□□ 0.66
SLC6A1-201ENST00000287766 UBTFP17480 764 aaKnown RBP19.19■□□□□ 0.66
SLC6A1-201ENST00000287766 APLP2Q06481 763 aa19.19■□□□□ 0.66
SLC6A1-201ENST00000287766 ZCCHC6Q5VYS8 1495 aaKnown RBP19.12■□□□□ 0.65
SLC6A1-201ENST00000287766 ERICH6Q7L0X2 663 aa19.08■□□□□ 0.65
SLC6A1-201ENST00000287766 YTHDC1Q96MU7 727 aaKnown RBP19.01■□□□□ 0.63
SLC6A1-201ENST00000287766 MYO15BQ96JP2 1530 aa19■□□□□ 0.63
SLC6A1-201ENST00000287766 ABCC9O60706 1549 aa18.99■□□□□ 0.63
SLC6A1-201ENST00000287766 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.95■□□□□ 0.62
SLC6A1-201ENST00000287766 HNRNPUL2Q1KMD3 747 aaKnown RBP18.78■□□□□ 0.6
SLC6A1-201ENST00000287766 PABPN1Q86U42 306 aaKnown RBP eCLIP18.77■□□□□ 0.6
SLC6A1-201ENST00000287766 ATP1B4Q9UN42 357 aaPredicted RBP18.77■□□□□ 0.59
SLC6A1-201ENST00000287766 SCRIBQ14160 1630 aa18.69■□□□□ 0.58
SLC6A1-201ENST00000287766 CCDC180Q9P1Z9 1646 aa18.67■□□□□ 0.58
SLC6A1-201ENST00000287766 ITGAEP38570 1179 aa18.63■□□□□ 0.57
SLC6A1-201ENST00000287766 NEFLP07196 543 aa18.59■□□□□ 0.57
SLC6A1-201ENST00000287766 DCAF1Q9Y4B6 1507 aa18.56■□□□□ 0.56
SLC6A1-201ENST00000287766 DIEXFQ68CQ4 756 aaKnown RBP18.55■□□□□ 0.56
SLC6A1-201ENST00000287766 RSF1Q96T23 1441 aaPredicted RBP18.43■□□□□ 0.54
SLC6A1-201ENST00000287766 CSRNP3Q8WYN3 585 aa18.35■□□□□ 0.53
SLC6A1-201ENST00000287766 GTF3C3Q9Y5Q9 886 aa18.3■□□□□ 0.52
SLC6A1-201ENST00000287766 CECR2Q9BXF3 1484 aa18.18■□□□□ 0.5
SLC6A1-201ENST00000287766 ZNF316A6NFI3 1004 aaPredicted RBP18.16■□□□□ 0.5
SLC6A1-201ENST00000287766 ACIN1Q9UKV3 1341 aaKnown RBP18.15■□□□□ 0.5
SLC6A1-201ENST00000287766 FAM50AQ14320 339 aaKnown RBP18.11■□□□□ 0.49
SLC6A1-201ENST00000287766 SCAF1Q9H7N4 1312 aaKnown RBP18.11■□□□□ 0.49
SLC6A1-201ENST00000287766 NEUROD1Q13562 356 aa18.08■□□□□ 0.49
SLC6A1-201ENST00000287766 RB1CC1Q8TDY2 1594 aa18.06■□□□□ 0.48
SLC6A1-201ENST00000287766 CNGB1Q14028 1251 aaPredicted RBP18.05■□□□□ 0.48
SLC6A1-201ENST00000287766 P3H3Q8IVL6 736 aa18.05■□□□□ 0.48
SLC6A1-201ENST00000287766 BCANQ96GW7 911 aa17.99■□□□□ 0.47
SLC6A1-201ENST00000287766 DAXXQ9UER7 740 aaPredicted RBP17.97■□□□□ 0.47
SLC6A1-201ENST00000287766 RTL5Q5HYW3 569 aaPredicted RBP17.95■□□□□ 0.46
SLC6A1-201ENST00000287766 CEP162Q5TB80 1403 aa17.94■□□□□ 0.46
SLC6A1-201ENST00000287766 POLR3GLQ9BT43 218 aa17.94■□□□□ 0.46
SLC6A1-201ENST00000287766 MROH2BQ7Z745 1585 aa17.93■□□□□ 0.46
SLC6A1-201ENST00000287766 MIER1Q8N108 512 aa17.87■□□□□ 0.45
SLC6A1-201ENST00000287766 SOGA1O94964 1423 aa17.86■□□□□ 0.45
SLC6A1-201ENST00000287766 NACADO15069 1562 aa17.84■□□□□ 0.45
SLC6A1-201ENST00000287766 ARID3CA6NKF2 412 aa17.82■□□□□ 0.44
SLC6A1-201ENST00000287766 CLIP1P30622 1438 aa17.82■□□□□ 0.44
SLC6A1-201ENST00000287766 ABCC8Q09428 1581 aa17.79■□□□□ 0.44
SLC6A1-201ENST00000287766 TRIM52Q96A61 297 aa17.77■□□□□ 0.44
SLC6A1-201ENST00000287766 WRNQ14191 1432 aaPredicted RBP eCLIP17.76■□□□□ 0.43
SLC6A1-201ENST00000287766 CCDC88BA6NC98 1476 aa17.75■□□□□ 0.43
SLC6A1-201ENST00000287766 TNIKQ9UKE5 1360 aa17.74■□□□□ 0.43
SLC6A1-201ENST00000287766 WIZO95785 1651 aa17.73■□□□□ 0.43
SLC6A1-201ENST00000287766 BAZ1AQ9NRL2 1556 aaPredicted RBP17.71■□□□□ 0.43
SLC6A1-201ENST00000287766 GOLGA3Q08378 1498 aa17.71■□□□□ 0.43
SLC6A1-201ENST00000287766 HIRIP3Q9BW71 556 aaPredicted RBP17.7■□□□□ 0.42
SLC6A1-201ENST00000287766 DDX10Q13206 875 aaKnown RBP17.67■□□□□ 0.42
SLC6A1-201ENST00000287766 ANP32CO43423 234 aa17.63■□□□□ 0.41
SLC6A1-201ENST00000287766 EEA1Q15075 1411 aa17.62■□□□□ 0.41
SLC6A1-201ENST00000287766 EIF5BO60841 1220 aaKnown RBP17.61■□□□□ 0.41
SLC6A1-201ENST00000287766 ZNF326Q5BKZ1 582 aaKnown RBP17.6■□□□□ 0.41
SLC6A1-201ENST00000287766 CDK11AQ9UQ88 783 aaPredicted RBP17.58■□□□□ 0.4
SLC6A1-201ENST00000287766 BAZ1BQ9UIG0 1483 aaKnown RBP17.55■□□□□ 0.4
SLC6A1-201ENST00000287766 RUSC2Q8N2Y8 1516 aa17.55■□□□□ 0.4
SLC6A1-201ENST00000287766 CEP164Q9UPV0 1460 aa17.54■□□□□ 0.4
SLC6A1-201ENST00000287766 FBLN2P98095 1184 aa17.52■□□□□ 0.4
SLC6A1-201ENST00000287766 CHIC2Q9UKJ5 165 aa17.52■□□□□ 0.39
SLC6A1-201ENST00000287766 FKBP8Q14318 412 aa17.51■□□□□ 0.39
SLC6A1-201ENST00000287766 CLSPNQ9HAW4 1339 aa17.5■□□□□ 0.39
SLC6A1-201ENST00000287766 KANK4Q5T7N3 995 aaPredicted RBP17.48■□□□□ 0.39
SLC6A1-201ENST00000287766 MYT1LQ9UL68 1186 aa17.44■□□□□ 0.38
SLC6A1-201ENST00000287766 SIN3AQ96ST3 1273 aa17.44■□□□□ 0.38
SLC6A1-201ENST00000287766 TONSLQ96HA7 1378 aa17.43■□□□□ 0.38
SLC6A1-201ENST00000287766 ZNF777Q9ULD5 760 aaPredicted RBP17.42■□□□□ 0.38
SLC6A1-201ENST00000287766 TOP2AP11388 1531 aaKnown RBP17.38■□□□□ 0.37
SLC6A1-201ENST00000287766 HNRNPUQ00839 825 aaKnown RBP eCLIP17.37■□□□□ 0.37
SLC6A1-201ENST00000287766 KIF27Q86VH2 1401 aa17.36■□□□□ 0.37
SLC6A1-201ENST00000287766 VPS8Q8N3P4 1428 aa17.36■□□□□ 0.37
SLC6A1-201ENST00000287766 RRP7BPQ9NSQ0 103 aa17.35■□□□□ 0.37
SLC6A1-201ENST00000287766 IRX6P78412 446 aaPredicted RBP17.34■□□□□ 0.37
SLC6A1-201ENST00000287766 MTUS2Q5JR59 1369 aa17.32■□□□□ 0.36
SLC6A1-201ENST00000287766 FAM9BQ8IZU0 186 aa17.31■□□□□ 0.36
SLC6A1-201ENST00000287766 RAPGEF2Q9Y4G8 1499 aa17.3■□□□□ 0.36
SLC6A1-201ENST00000287766 SENP3-EIF4A1A0A087X0R7 540 aa17.28■□□□□ 0.36
SLC6A1-201ENST00000287766 NPM2Q86SE8 214 aaKnown RBP17.28■□□□□ 0.36
SLC6A1-201ENST00000287766 NBR1Q14596 966 aa17.28■□□□□ 0.36
SLC6A1-201ENST00000287766 CCNB3Q8WWL7 1395 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms