RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 NISCHQ9Y2I1 1504 aa21.45■■□□□ 1.02
COL4A6-209ENST00000545689 DCAF8L2P0C7V8 631 aa21.32■■□□□ 1
COL4A6-209ENST00000545689 SUPT5HO00267 1087 aaKnown RBP20.53■□□□□ 0.88
COL4A6-209ENST00000545689 SHROOM4Q9ULL8 1493 aa20.21■□□□□ 0.83
COL4A6-209ENST00000545689 PELP1Q8IZL8 1130 aaKnown RBP19.64■□□□□ 0.74
COL4A6-209ENST00000545689 APLP2Q06481 763 aa19.58■□□□□ 0.72
COL4A6-209ENST00000545689 EHMT2Q96KQ7 1210 aa19.49■□□□□ 0.71
COL4A6-209ENST00000545689 ZEB1P37275 1124 aaPredicted RBP19.33■□□□□ 0.69
COL4A6-209ENST00000545689 PCGF6Q9BYE7 350 aa19.27■□□□□ 0.67
COL4A6-209ENST00000545689 FAM9AQ8IZU1 332 aaPredicted RBP19.25■□□□□ 0.67
COL4A6-209ENST00000545689 TRIM41Q8WV44 630 aa19.19■□□□□ 0.66
COL4A6-209ENST00000545689 CENPBP07199 599 aaPredicted RBP19.06■□□□□ 0.64
COL4A6-209ENST00000545689 CCER1Q8TC90 406 aaPredicted RBP18.95■□□□□ 0.62
COL4A6-209ENST00000545689 TTBK1Q5TCY1 1321 aaPredicted RBP18.92■□□□□ 0.62
COL4A6-209ENST00000545689 UBTFP17480 764 aaKnown RBP18.84■□□□□ 0.61
COL4A6-209ENST00000545689 TRIM26Q12899 539 aaPredicted RBP18.74■□□□□ 0.59
COL4A6-209ENST00000545689 RANGAP1P46060 587 aaPredicted RBP18.72■□□□□ 0.59
COL4A6-209ENST00000545689 ATP1B4Q9UN42 357 aaPredicted RBP18.63■□□□□ 0.57
COL4A6-209ENST00000545689 ERICH6Q7L0X2 663 aa18.62■□□□□ 0.57
COL4A6-209ENST00000545689 HRCP23327 699 aa18.56■□□□□ 0.56
COL4A6-209ENST00000545689 CHIC1Q5VXU3 224 aa18.54■□□□□ 0.56
COL4A6-209ENST00000545689 NEFLP07196 543 aa18.54■□□□□ 0.56
COL4A6-209ENST00000545689 MYT1Q01538 1121 aa18.54■□□□□ 0.56
COL4A6-209ENST00000545689 YTHDC1Q96MU7 727 aaKnown RBP18.34■□□□□ 0.53
COL4A6-209ENST00000545689 PPARGC1BQ86YN6 1023 aaKnown RBP18.32■□□□□ 0.52
COL4A6-209ENST00000545689 LOC105371045A0A1W2PR82 267 aa18.29■□□□□ 0.52
COL4A6-209ENST00000545689 HNRNPUL2Q1KMD3 747 aaKnown RBP18.09■□□□□ 0.49
COL4A6-209ENST00000545689 ITGAEP38570 1179 aa18.07■□□□□ 0.48
COL4A6-209ENST00000545689 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18■□□□□ 0.47
COL4A6-209ENST00000545689 ABCC9O60706 1549 aa17.99■□□□□ 0.47
COL4A6-209ENST00000545689 DIEXFQ68CQ4 756 aaKnown RBP17.95■□□□□ 0.46
COL4A6-209ENST00000545689 DAXXQ9UER7 740 aaPredicted RBP17.88■□□□□ 0.45
COL4A6-209ENST00000545689 ZCCHC6Q5VYS8 1495 aaKnown RBP17.84■□□□□ 0.45
COL4A6-209ENST00000545689 POLR3GLQ9BT43 218 aa17.84■□□□□ 0.45
COL4A6-209ENST00000545689 MYT1LQ9UL68 1186 aa17.83■□□□□ 0.45
COL4A6-209ENST00000545689 FAM50AQ14320 339 aaKnown RBP17.79■□□□□ 0.44
COL4A6-209ENST00000545689 CCDC180Q9P1Z9 1646 aa17.77■□□□□ 0.43
COL4A6-209ENST00000545689 PABPN1Q86U42 306 aaKnown RBP eCLIP17.76■□□□□ 0.43
COL4A6-209ENST00000545689 DCAF1Q9Y4B6 1507 aa17.67■□□□□ 0.42
COL4A6-209ENST00000545689 CSRNP3Q8WYN3 585 aa17.66■□□□□ 0.42
COL4A6-209ENST00000545689 TRIM52Q96A61 297 aa17.65■□□□□ 0.42
COL4A6-209ENST00000545689 ZNF316A6NFI3 1004 aaPredicted RBP17.64■□□□□ 0.41
COL4A6-209ENST00000545689 ANP32CO43423 234 aa17.6■□□□□ 0.41
COL4A6-209ENST00000545689 SCRIBQ14160 1630 aa17.59■□□□□ 0.41
COL4A6-209ENST00000545689 NEUROD1Q13562 356 aa17.58■□□□□ 0.4
COL4A6-209ENST00000545689 RTL5Q5HYW3 569 aaPredicted RBP17.54■□□□□ 0.4
COL4A6-209ENST00000545689 CNGB1Q14028 1251 aaPredicted RBP17.5■□□□□ 0.39
COL4A6-209ENST00000545689 GTF3C3Q9Y5Q9 886 aa17.5■□□□□ 0.39
COL4A6-209ENST00000545689 CLSPNQ9HAW4 1339 aa17.47■□□□□ 0.39
COL4A6-209ENST00000545689 SLC4A1APQ9BWU0 796 aaKnown RBP17.46■□□□□ 0.39
COL4A6-209ENST00000545689 ACIN1Q9UKV3 1341 aaKnown RBP17.42■□□□□ 0.38
COL4A6-209ENST00000545689 CDK11AQ9UQ88 783 aaPredicted RBP17.41■□□□□ 0.38
COL4A6-209ENST00000545689 ZNF326Q5BKZ1 582 aaKnown RBP17.32■□□□□ 0.36
COL4A6-209ENST00000545689 BCANQ96GW7 911 aa17.29■□□□□ 0.36
COL4A6-209ENST00000545689 EEA1Q15075 1411 aa17.27■□□□□ 0.36
COL4A6-209ENST00000545689 P3H3Q8IVL6 736 aa17.26■□□□□ 0.35
COL4A6-209ENST00000545689 FBLN2P98095 1184 aa17.25■□□□□ 0.35
COL4A6-209ENST00000545689 RB1CC1Q8TDY2 1594 aa17.25■□□□□ 0.35
COL4A6-209ENST00000545689 TONSLQ96HA7 1378 aa17.24■□□□□ 0.35
COL4A6-209ENST00000545689 ZBTB47Q9UFB7 747 aaPredicted RBP17.19■□□□□ 0.34
COL4A6-209ENST00000545689 NACADO15069 1562 aa17.17■□□□□ 0.34
COL4A6-209ENST00000545689 RSF1Q96T23 1441 aaPredicted RBP17.14■□□□□ 0.34
COL4A6-209ENST00000545689 CANXP27824 592 aaKnown RBP17.14■□□□□ 0.33
COL4A6-209ENST00000545689 NEFMP07197 916 aa17.13■□□□□ 0.33
COL4A6-209ENST00000545689 GOLGA3Q08378 1498 aa17.13■□□□□ 0.33
COL4A6-209ENST00000545689 CLIP1P30622 1438 aa17.13■□□□□ 0.33
COL4A6-209ENST00000545689 ANP32AP39687 249 aaKnown RBP17.12■□□□□ 0.33
COL4A6-209ENST00000545689 ZNF777Q9ULD5 760 aaPredicted RBP17.11■□□□□ 0.33
COL4A6-209ENST00000545689 ARID3CA6NKF2 412 aa17.05■□□□□ 0.32
COL4A6-209ENST00000545689 MYO15BQ96JP2 1530 aa17.03■□□□□ 0.32
COL4A6-209ENST00000545689 CEP162Q5TB80 1403 aa17.03■□□□□ 0.32
COL4A6-209ENST00000545689 MTUS2Q5JR59 1369 aa17■□□□□ 0.31
COL4A6-209ENST00000545689 FKBP8Q14318 412 aa17■□□□□ 0.31
COL4A6-209ENST00000545689 TNIKQ9UKE5 1360 aa16.98■□□□□ 0.31
COL4A6-209ENST00000545689 WRNQ14191 1432 aaPredicted RBP eCLIP16.97■□□□□ 0.31
COL4A6-209ENST00000545689 DDX10Q13206 875 aaKnown RBP16.97■□□□□ 0.31
COL4A6-209ENST00000545689 HNRNPUQ00839 825 aaKnown RBP eCLIP16.97■□□□□ 0.31
COL4A6-209ENST00000545689 CEP164Q9UPV0 1460 aa16.97■□□□□ 0.31
COL4A6-209ENST00000545689 BAZ1AQ9NRL2 1556 aaPredicted RBP16.93■□□□□ 0.3
COL4A6-209ENST00000545689 BAZ1BQ9UIG0 1483 aaKnown RBP16.92■□□□□ 0.3
COL4A6-209ENST00000545689 KIF27Q86VH2 1401 aa16.89■□□□□ 0.29
COL4A6-209ENST00000545689 TSPY4P0CV99 314 aa16.88■□□□□ 0.29
COL4A6-209ENST00000545689 TSPY10P0CW01 314 aa16.88■□□□□ 0.29
COL4A6-209ENST00000545689 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.87■□□□□ 0.29
COL4A6-209ENST00000545689 FAM9BQ8IZU0 186 aa16.87■□□□□ 0.29
COL4A6-209ENST00000545689 CHIC2Q9UKJ5 165 aa16.85■□□□□ 0.29
COL4A6-209ENST00000545689 TMC1Q8TDI8 760 aa16.85■□□□□ 0.29
COL4A6-209ENST00000545689 UPF2Q9HAU5 1272 aaKnown RBP16.84■□□□□ 0.29
COL4A6-209ENST00000545689 NPM1P06748 294 aaKnown RBP eCLIP16.83■□□□□ 0.28
COL4A6-209ENST00000545689 EIF4G2P78344 907 aaKnown RBP eCLIP16.82■□□□□ 0.28
COL4A6-209ENST00000545689 MIER1Q8N108 512 aa16.82■□□□□ 0.28
COL4A6-209ENST00000545689 ESF1Q9H501 851 aaKnown RBP16.81■□□□□ 0.28
COL4A6-209ENST00000545689 NPM2Q86SE8 214 aaKnown RBP16.81■□□□□ 0.28
COL4A6-209ENST00000545689 MRS2Q9HD23 443 aa16.81■□□□□ 0.28
COL4A6-209ENST00000545689 CCDC136Q96JN2 1154 aa16.79■□□□□ 0.28
COL4A6-209ENST00000545689 WDR43Q15061 677 aaKnown RBP eCLIP16.78■□□□□ 0.28
COL4A6-209ENST00000545689 SLC24A1O60721 1099 aa16.77■□□□□ 0.28
COL4A6-209ENST00000545689 CHGAP10645 457 aaKnown RBP16.76■□□□□ 0.27
COL4A6-209ENST00000545689 CHMP7Q8WUX9 453 aaPredicted RBP16.76■□□□□ 0.27
COL4A6-209ENST00000545689 STAG3Q9UJ98 1225 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms