Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.06■□□□□ 0.16
CIITAP33076 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 KRT8P24-201ENST00000560290 1559 ntBASIC16.06■□□□□ 0.16
CIITAP33076 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC16.06■□□□□ 0.16
CIITAP33076 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC16.06■□□□□ 0.16
CIITAP33076 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.06■□□□□ 0.16
CIITAP33076 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 AL627231.1-201ENST00000394467 1125 ntBASIC16.06■□□□□ 0.16
CIITAP33076 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.06■□□□□ 0.16
CIITAP33076 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC16.06■□□□□ 0.16
CIITAP33076 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC16.06■□□□□ 0.16
CIITAP33076 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CIITAP33076 RNA5SP423-201ENST00000517127 109 ntBASIC16.06■□□□□ 0.16
CIITAP33076 CMC2-204ENST00000562713 573 ntTSL 3 BASIC16.06■□□□□ 0.16
CIITAP33076 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.06■□□□□ 0.16
CIITAP33076 CMC2-209ENST00000565108 399 ntTSL 2 BASIC16.06■□□□□ 0.16
CIITAP33076 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC16.06■□□□□ 0.16
CIITAP33076 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC16.06■□□□□ 0.16
CIITAP33076 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.06■□□□□ 0.16
CIITAP33076 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
CIITAP33076 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.06■□□□□ 0.16
CIITAP33076 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 MST1P2-201ENST00000457982 2291 ntBASIC16.06■□□□□ 0.16
CIITAP33076 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CIITAP33076 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CIITAP33076 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CIITAP33076 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CIITAP33076 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.05■□□□□ 0.16
CIITAP33076 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
CIITAP33076 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CIITAP33076 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.05■□□□□ 0.16
CIITAP33076 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC16.05■□□□□ 0.16
CIITAP33076 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.05■□□□□ 0.16
CIITAP33076 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.05■□□□□ 0.16
CIITAP33076 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.05■□□□□ 0.16
CIITAP33076 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 AC007326.1-201ENST00000604539 458 ntBASIC16.05■□□□□ 0.16
CIITAP33076 AC051619.9-201ENST00000623237 597 ntBASIC16.05■□□□□ 0.16
CIITAP33076 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CIITAP33076 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CIITAP33076 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC16.05■□□□□ 0.16
CIITAP33076 AL157996.1-201ENST00000624684 2299 ntBASIC16.05■□□□□ 0.16
CIITAP33076 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CIITAP33076 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.04■□□□□ 0.16
CIITAP33076 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC16.04■□□□□ 0.16
CIITAP33076 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.04■□□□□ 0.16
CIITAP33076 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
CIITAP33076 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CIITAP33076 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CIITAP33076 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms