Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AC000077.1-201ENST00000420012 953 ntBASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AHCYP3-201ENST00000420053 1279 ntBASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 HNRNPA1P25-201ENST00000422644 937 ntBASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 YY1P2-201ENST00000438766 948 ntBASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AL356000.1-201ENST00000441073 1238 ntBASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 URB1-AS1-201ENST00000534991 831 ntBASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
SHANK3Q9BYB0 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHANK3Q9BYB0 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SHANK3Q9BYB0 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.83■□□□□ 0.45
SHANK3Q9BYB0 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC17.83■□□□□ 0.45
SHANK3Q9BYB0 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SHANK3Q9BYB0 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
SHANK3Q9BYB0 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 AC144831.1-201ENST00000573312 2656 ntBASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 KRT18P44-201ENST00000416086 1285 ntBASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 RN7SL173P-201ENST00000461853 292 ntBASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 LY6E-215ENST00000523847 427 ntTSL 3 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 EMP3-204ENST00000596315 761 ntTSL 2 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 AL356740.1-201ENST00000602192 1297 ntBASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 AC139100.2-201ENST00000616901 662 ntBASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 SNORA50D-202ENST00000627561 132 ntBASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SHANK3Q9BYB0 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 GUCY2EP-203ENST00000531117 1918 ntBASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 AC140479.7-201ENST00000636301 2332 ntBASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 AC007679.1-201ENST00000458609 502 ntBASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 B9D1-206ENST00000461069 923 ntTSL 2 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 MIR3940-201ENST00000579148 102 ntBASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 AC008622.3-201ENST00000621170 600 ntBASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 AC245140.2-201ENST00000624054 1939 ntBASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHANK3Q9BYB0 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC17.81■□□□□ 0.44
SHANK3Q9BYB0 AK2-208ENST00000487289 920 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms